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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:144.4 nTPM
GTEx:128.7 nTPM
FANTOM5:407.1 Scaled Tags Per Million
Pig:162.1 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 144.4
Sample id Sample description nTPM
Putamen
nTPM: 144.4
2482 Female, age 94, left hemisphere 161.6
2647 Male, age 75, left hemisphere 146.5
1829 Male, age 74, unknown 145.9
1838 Male, age 80, right hemisphere 143.9
2466 Female, age 79, unknown 143.4
1937 Female, age 91, right hemisphere 142.3
2489 Female, age 72, unknown 127.3

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 128.7
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 128.7
Samples: 205

Max nTPM: 245.6
Min nTPM: 77.1
Std nTPM: 27.6
Median nTPM: 123.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 245.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 241.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 227.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 225.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 211.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 202.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 196.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 193.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 191.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 185.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 176.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 176.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 176.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 174.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 172.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 166.2
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 165.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 164.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 162.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 162.2
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 161.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 160.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 160.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 157.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 156.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 156.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 155.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 153.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 153.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 153.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 152.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 152.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 149.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 148.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 147.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 147.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 146.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 146.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 145.8
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 145.7
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 145.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 144.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 143.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 143.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 142.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 142.7
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 142.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 142.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 142.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 142.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 142.0
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 141.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 141.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 141.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 140.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 140.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 138.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 138.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 138.1
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 138.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 137.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 137.8
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 137.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 135.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 133.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 133.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 132.6
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 132.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 132.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 132.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 131.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 131.5
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 131.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 131.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 131.0
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 130.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 130.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 130.4
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 130.3
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 130.1
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 128.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 128.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 128.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 128.4
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 128.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 128.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 127.4
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 127.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 126.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 126.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 126.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 125.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 125.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 125.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 125.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 125.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 124.8
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 124.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 124.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 124.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 124.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 124.2
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 123.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 123.5
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 123.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 122.5
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 122.4
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 122.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 122.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 121.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 121.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 121.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 121.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 121.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 120.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 120.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 120.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 119.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 119.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 119.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 119.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 119.2
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 119.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 118.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 118.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 118.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 118.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 118.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 118.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 117.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 117.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 116.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 116.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 116.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 116.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 116.0
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 115.6
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 115.5
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 115.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 114.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 114.0
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 113.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 113.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 113.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 113.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 113.0
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 113.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 112.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 111.8
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 111.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 111.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 111.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 111.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 111.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 111.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 111.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 110.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 110.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 110.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 109.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 108.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 108.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 108.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 108.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 108.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 107.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 107.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 107.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 106.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 106.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 106.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 106.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 105.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 105.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 104.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 104.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 104.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 103.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 103.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 103.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 102.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 102.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 102.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 101.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 100.3
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 99.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 99.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 99.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 99.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 98.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 97.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 97.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 96.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 95.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 94.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 94.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 90.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 90.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 90.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 88.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 88.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 88.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 86.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 83.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 77.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 407.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 407.1
FF:10176-103C5 60 years, female 407.1

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 162.1
Pig sample Sample description nTPM
Putamen
nTPM: 162.1
Samples: 4

Max nTPM: 213.9
Min nTPM: 131.3
Sample A Female 160.7
Sample B Female 131.3
Sample C Male 213.9
Sample D Male 142.5

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