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UQCRC1
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:111.6 nTPM
HPA:111.6 nTPM
FANTOM5:113.2 Scaled Tags Per Million
Pig:104.1 nTPM
Mouse:294.5 nTPM
Allen mouse:15.3 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 111.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 98.8
2032 Female, age 42, unknown 108.0
2497 Male, age 66, unknown 95.2
2396 Male, age 61, right hemisphere 93.1
Centromedial thalamic nucleus
nTPM: 91.5
2401 Male, age 76, right hemisphere 109.2
2279 Female, age 85, left hemisphere 73.7
Habenula
nTPM: 99.4
1957 Male, age 80, both hemispheres 106.9
2276 Male, age 66, unknown 99.9
2203 Male, age 61, left hemisphere 98.7
2252 Male, age 62, unknown 92.0
Lateral geniculate body
nTPM: 111.6
2106 Female, age 67, right hemisphere 138.0
2035 Female, age 72, unknown 122.4
2399 Male, age 61, left hemisphere 119.6
1953 Male, age 62, unknown 115.4
2575 Female, age 94, right hemisphere 103.2
2857 Male, age 74, right hemisphere 102.7
2841 Male, age 80, both hemispheres 97.7
2659 Male, age 66, unknown 94.0
Lateral thalamic nuclei
nTPM: 99.5
2765 Female, age 67, both hemispheres 113.1
2573 Female, age 94, left hemisphere 110.2
1903 Male, age 76, left hemisphere 92.6
2661 Female, age 72, unknown 92.1
2577 Male, age 74, both hemispheres 89.7
Medial dorsal thalamic nucleus
nTPM: 101.6
2572 Female, age 94, right hemisphere 125.0
2498 Male, age 66, unknown 109.4
1859 Male, age 76, both hemispheres 109.0
1810 Male, age 48, unknown 104.6
2492 Male, age 75, right hemisphere 103.7
2283 Male, age 80, right hemisphere 103.6
1971 Male, age 61, right hemisphere 102.2
2576 Male, age 74, both hemispheres 100.6
2026 Male, age 62, unknown 97.6
2402 Female, age 67, both hemispheres 95.6
1930 Female, age 42, unknown 95.0
2039 Female, age 72, unknown 88.8
2660 Female, age 72, unknown 85.3
Medial geniculate body
nTPM: 95.8
2650 Female, age 94, left hemisphere 111.3
1811 Female, age 42, unknown 99.7
2657 Male, age 74, right hemisphere 98.8
2207 Male, age 80, right hemisphere 93.7
2217 Female, age 72, unknown 90.6
2571 Male, age 75, right hemisphere 90.3
2049 Male, age 76, both hemispheres 86.2
Nucleus reuniens
nTPM: 92.2
2212 Female, age 67, left hemisphere 102.4
2205 Male, age 80, left hemisphere 91.4
2210 Female, age 85, left hemisphere 82.8
Nucleus rhomboideus
nTPM: 89.3
2206 Male, age 80, both hemispheres 102.0
2213 Female, age 67, left hemisphere 85.6
2280 Female, age 85, left hemisphere 80.3
Posterior thalamic nucleus
nTPM: 103.5
2649 Female, age 94, both hemispheres 122.1
2655 Male, age 74, right hemisphere 100.4
2266 Male, age 76, right hemisphere 99.0
2495 Female, age 67, right hemisphere 92.6
Pulvinar
nTPM: 105.9
1932 Male, age 80, right hemisphere 119.7
1972 Male, age 62, unknown 119.2
2398 Male, age 61, left hemisphere 115.4
1899 Female, age 42, unknown 107.6
2499 Male, age 66, unknown 104.1
2496 Female, age 67, right hemisphere 100.9
1929 Male, age 48, unknown 99.8
2724 Male, age 74, right hemisphere 99.7
2214 Male, age 76, right hemisphere 96.8
2582 Female, age 72, unknown 95.6
Subthalamic nucleus
nTPM: 95.9
2282 Male, age 61, both hemispheres 104.1
2124 Male, age 62, unknown 102.0
2658 Male, age 74, both hemispheres 99.2
2275 Male, age 66, unknown 97.2
2406 Female, age 72, unknown 94.2
2056 Female, age 72, unknown 93.9
2779 Female, age 42, unknown 91.8
2216 Male, age 48, unknown 84.8
Ventral posterolateral thalamic nucleus
nTPM: 102.0
2740 Male, age 76, right hemisphere 122.8
2397 Male, age 61, right hemisphere 104.8
2570 Male, age 75, right hemisphere 103.8
2197 Male, age 80, both hemispheres 102.7
2578 Male, age 74, both hemispheres 90.9
2581 Female, age 72, unknown 86.7
Ventral posteromedial thalamic nucleus
nTPM: 99.6
2281 Male, age 75, right hemisphere 110.1
2202 Male, age 61, left hemisphere 105.7
2758 Male, age 80, both hemispheres 102.4
2653 Male, age 74, both hemispheres 91.1
2127 Male, age 76, right hemisphere 88.5
Ventral thalamic nuclei
nTPM: 97.6
1845 Male, age 48, unknown 113.7
1860 Male, age 76, both hemispheres 102.5
2580 Male, age 66, unknown 101.2
2858 Female, age 72, unknown 98.3
2285 Male, age 62, unknown 95.9
1912 Female, age 42, unknown 93.9
2204 Male, age 80, both hemispheres 93.5
2291 Female, age 72, unknown 92.0
2652 Male, age 74, left hemisphere 87.9
Ventromedial nucleus
nTPM: 83.9
1982 Female, age 72, unknown 88.8
1822 Female, age 42, unknown 78.9
Zona incerta
nTPM: 89.0
2822 Male, age 74, right hemisphere 97.2
2215 Male, age 66, unknown 93.3
2208 Male, age 80, right hemisphere 90.8
2403 Male, age 62, unknown 84.6
2663 Female, age 72, unknown 79.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 113.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 113.2
FF:10154-103A1 76 years, female 113.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 104.1
Pig sample Sample description nTPM
Thalamus
nTPM: 104.1
Samples: 4

Max nTPM: 130.3
Min nTPM: 72.8
Sample A Female 130.3
Sample B Female 87.7
Sample C Male 125.5
Sample D Male 72.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 294.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 294.5
Samples: 4

Max nTPM: 303.1
Min nTPM: 285.9
Sample A Male 301.0
Sample B Male 285.9
Sample C Female 303.1
Sample D Female 287.8

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.3
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 15.3
68744540 Antisense, RP_050208_01_B03, Mouse strain C57BL/6J (56 days, male) 15.3

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