BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.6 nTPM
HPA:37.6 nTPM
GTEx:36.2 nTPM
FANTOM5:57.9 Scaled Tags Per Million
Pig:19.5 nTPM
Mouse:57.0 nTPM
Allen mouse:6.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA019204
Glial cells Medium
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.2
2481 Female, age 94, left hemisphere 37.9
1857 Female, age 85, left hemisphere 36.5
1854 Male, age 80, left hemisphere 35.5
2846 Female, age 79, unknown 34.3
2288 Male, age 75, left hemisphere 33.7
2290 Female, age 72, unknown 32.7
1781 Male, age 74, unknown 31.8
2289 Male, age 61, right hemisphere 31.3
Claustrum
nTPM: 32.4
2392 Female, age 94, both hemispheres 33.8
2198 Male, age 80, both hemispheres 33.7
2196 Female, age 79, unknown 32.7
2491 Male, age 75, both hemispheres 32.7
2645 Female, age 72, unknown 32.2
1956 Male, age 74, unknown 32.0
2284 Female, age 91, both hemispheres 31.5
2292 Female, age 85, both hemispheres 31.3
2568 Male, age 61, both hemispheres 31.3
Globus pallidus, externus
nTPM: 36.7
2772 Female, age 79, unknown 40.4
1996 Male, age 80, right hemisphere 38.7
2395 Male, age 75, both hemispheres 37.8
2567 Female, age 72, unknown 33.5
2646 Male, age 61, right hemisphere 33.3
Globus pallidus, internus
nTPM: 37.6
2778 Female, age 91, both hemispheres 40.4
2287 Male, age 75, right hemisphere 39.3
2483 Female, age 94, right hemisphere 39.3
1818 Male, age 74, unknown 37.7
2037 Male, age 80, right hemisphere 36.8
2111 Female, age 85, right hemisphere 36.1
2566 Female, age 72, unknown 33.7
Nucleus accumbens
nTPM: 35.3
2286 Male, age 75, left hemisphere 37.4
1806 Female, age 85, left hemisphere 35.9
1856 Female, age 91, right hemisphere 35.8
2391 Female, age 94, left hemisphere 35.4
2698 Female, age 72, unknown 34.9
2824 Male, age 61, right hemisphere 34.9
2732 Male, age 80, right hemisphere 34.4
1783 Male, age 74, unknown 33.5
Nucleus basalis of Meynert
nTPM: 33.9
2569 Male, age 61, both hemispheres 35.1
2393 Male, age 80, right hemisphere 34.4
2484 Female, age 94, left hemisphere 34.0
2821 Male, age 75, both hemispheres 32.2
Nucleus of the diagonal band
nTPM: 34.3
2775 Male, age 80, right hemisphere 36.0
2195 Female, age 85, both hemispheres 35.0
1812 Female, age 91, both hemispheres 34.6
1979 Male, age 74, unknown 33.6
2029 Male, age 61, right hemisphere 32.5
Olfactory tubercle
nTPM: 34.8
1846 Male, age 80, right hemisphere 36.2
1998 Female, age 91, both hemispheres 35.1
2487 Female, age 94, left hemisphere 34.3
2856 Male, age 75, right hemisphere 33.7
Putamen
nTPM: 33.6
2482 Female, age 94, left hemisphere 36.7
2466 Female, age 79, unknown 35.1
1838 Male, age 80, right hemisphere 34.7
1937 Female, age 91, right hemisphere 33.4
2647 Male, age 75, left hemisphere 32.9
1829 Male, age 74, unknown 32.3
2489 Female, age 72, unknown 30.1
Septal nuclei
nTPM: 34.4
2031 Female, age 72, unknown 37.1
1960 Male, age 74, unknown 36.5
2009 Female, age 91, both hemispheres 34.7
2394 Male, age 61, left hemisphere 33.9
2199 Male, age 80, right hemisphere 33.1
2629 Female, age 94, right hemisphere 33.0
2059 Female, age 85, both hemispheres 32.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.3
Samples: 246

Max nTPM: 58.4
Min nTPM: 23.9
Std nTPM: 5.7
Median nTPM: 32.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 58.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 58.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 58.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 57.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 55.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 54.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 51.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 47.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 47.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 47.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 46.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.2
Samples: 246

Max nTPM: 69.6
Min nTPM: 24.7
Std nTPM: 6.7
Median nTPM: 34.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 69.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 67.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 58.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 57.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 56.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 55.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 55.3
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 53.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 53.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 49.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 48.7
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Brain - Putamen (basal ganglia)
Average nTPM: 34.9
Samples: 205

Max nTPM: 63.7
Min nTPM: 23.4
Std nTPM: 5.3
Median nTPM: 34.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 63.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 50.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 49.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 49.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 47.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 46.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 46.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 45.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 45.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 44.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 44.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 43.5
FF:10164-103B2 76 years, female 43.5
Globus pallidus
Scaled Tags Per Million: 57.9
FF:10175-103C4 60 years, female 74.9
FF:10161-103A8 76 years, female 40.8
Nucleus accumbens
Scaled Tags Per Million: 57.6
FF:10037-101F1 23-56 years, mixed 57.6
Putamen
Scaled Tags Per Million: 51.6
FF:10176-103C5 60 years, female 51.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.5
Pig sample Sample description nTPM
Caudate
nTPM: 16.8
Samples: 4

Max nTPM: 17.5
Min nTPM: 16.3
Sample A Female 16.8
Sample B Female 16.4
Sample C Male 17.5
Sample D Male 16.3
Putamen
nTPM: 19.5
Samples: 4

Max nTPM: 24.4
Min nTPM: 17.3
Sample A Female 18.4
Sample B Female 17.3
Sample C Male 24.4
Sample D Male 18.0
Septum
nTPM: 18.7
Samples: 4

Max nTPM: 20.0
Min nTPM: 16.7
Sample A Female 20.0
Sample B Female 18.3
Sample C Male 19.7
Sample D Male 16.7
Ventral pallidum
nTPM: 16.9
Samples: 4

Max nTPM: 17.8
Min nTPM: 15.8
Sample A Female 17.2
Sample B Female 17.8
Sample C Male 16.6
Sample D Male 15.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 57.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 49.5
Samples: 4

Max nTPM: 52.8
Min nTPM: 47.3
Sample A Male 47.3
Sample B Male 47.3
Sample C Female 50.6
Sample D Female 52.8
Septum
nTPM: 57.0
Samples: 4

Max nTPM: 59.2
Min nTPM: 54.6
Sample A Male 54.6
Sample B Male 59.2
Sample C Female 55.6
Sample D Female 58.4
Ventral forebrain
nTPM: 53.1
Samples: 4

Max nTPM: 56.7
Min nTPM: 51.6
Sample A Male 52.4
Sample B Male 51.8
Sample C Female 56.7
Sample D Female 51.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.9
67978662 Antisense, RP_040923_01_E04, Mouse strain C57BL/6J (56 days, male) 2.9
Pallidum
Expression energy: 6.1
67978662 Antisense, RP_040923_01_E04, Mouse strain C57BL/6J (56 days, male) 6.1

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