MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.8 nTPM
HPA:46.8 nTPM
GTEx:48.7 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:70.6 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.4
1870 Female, age 42, unknown 40.0
2411 Female, age 72, unknown 40.0
2586 Male, age 75, left hemisphere 39.4
1833 Male, age 53, unknown 37.9
2019 Male, age 18, unknown 37.6
2666 Male, age 74, left hemisphere 36.1
1830 Male, age 51, unknown 35.9
1827 Male, age 72, unknown 35.8
2219 Male, age 76, both hemispheres 35.7
2828 Female, age 72, unknown 35.4
Dorsal raphe nucleus
nTPM: 43.0
2047 Male, age 72, unknown 46.3
2298 Female, age 72, unknown 45.8
2750 Male, age 76, both hemispheres 43.2
1828 Male, age 53, unknown 41.3
2016 Female, age 72, unknown 38.2
Inferior colliculus
nTPM: 37.2
2097 Female, age 72, unknown 39.4
1890 Male, age 53, unknown 37.8
1848 Female, age 42, unknown 37.2
2849 Male, age 72, unknown 34.5
Median raphe nucleus
nTPM: 46.8
2220 Male, age 76, midline 46.8
Pedunculopontine tegmental nucleus
nTPM: 39.9
2334 Male, age 80, both hemispheres 43.5
1921 Female, age 85, both hemispheres 39.1
2338 Male, age 61, both hemispheres 37.2
Periaquaductal grey, anterior
nTPM: 38.7
1947 Male, age 18, unknown 41.2
1795 Male, age 51, unknown 37.4
2502 Female, age 75, unknown 37.4
Periaquaductal grey, dorsal
nTPM: 36.7
1840 Male, age 53, unknown 39.7
2850 Male, age 76, both hemispheres 37.7
2464 Female, age 72, unknown 35.6
1831 Male, age 72, unknown 33.8
Periaquaductal grey, lateral
nTPM: 35.5
2140 Male, age 76, both hemispheres 36.3
2053 Male, age 18, unknown 35.5
2272 Male, age 74, both hemispheres 34.7
Pretectal area
nTPM: 36.6
2825 Male, age 18, unknown 37.9
2224 Female, age 72, unknown 37.6
2007 Male, age 72, unknown 37.0
2273 Male, age 74, both hemispheres 36.9
2667 Female, age 75, unknown 36.8
1816 Male, age 51, unknown 36.7
1815 Male, age 53, unknown 36.6
1817 Female, age 42, unknown 36.6
1944 Female, age 72, unknown 35.8
2316 Male, age 76, right hemisphere 35.4
2407 Male, age 75, both hemispheres 35.2
Red nucleus
nTPM: 37.7
1821 Female, age 72, unknown 42.8
1904 Male, age 53, unknown 39.2
1954 Female, age 42, unknown 39.2
2503 Female, age 72, unknown 38.0
2725 Female, age 75, unknown 37.6
2769 Male, age 72, unknown 37.6
1865 Male, age 51, unknown 37.3
2588 Male, age 74, left hemisphere 37.2
2227 Male, age 72, unknown 36.6
2584 Male, age 75, left hemisphere 35.7
2785 Male, age 18, unknown 35.6
2823 Male, age 76, right hemisphere 35.5
Substantia nigra
nTPM: 44.1
2241 Male, age 72, unknown 54.4
1916 Female, age 42, unknown 48.6
1851 Male, age 51, unknown 47.8
2409 Female, age 72, unknown 45.6
1889 Female, age 72, unknown 41.3
1941 Male, age 53, unknown 41.3
2699 Male, age 18, unknown 41.2
2590 Female, age 75, unknown 40.9
2665 Male, age 74, both hemispheres 40.6
2583 Male, age 75, right hemisphere 39.4
Superior colliculus
nTPM: 35.6
2668 Female, age 75, unknown 38.8
2587 Male, age 74, left hemisphere 36.2
1839 Male, age 51, unknown 36.1
2261 Male, age 18, unknown 35.7
1895 Male, age 76, right hemisphere 35.4
1796 Male, age 53, unknown 35.3
1913 Female, age 42, unknown 35.1
2087 Female, age 72, unknown 35.1
1995 Male, age 72, unknown 34.4
2664 Male, age 75, both hemispheres 34.1
Ventral tegmental area
nTPM: 42.0
2410 Female, age 72, unknown 44.8
1915 Female, age 42, unknown 44.5
2218 Male, age 76, both hemispheres 42.2
1942 Male, age 51, unknown 41.1
2223 Female, age 72, unknown 39.9
2021 Male, age 53, unknown 39.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.7
Samples: 139

Max nTPM: 72.7
Min nTPM: 29.9
Std nTPM: 8.1
Median nTPM: 47.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 72.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 72.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 71.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 66.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 63.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 63.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 62.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 62.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 60.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 60.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.6
FF:10158-103A5 76 years, female 47.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.2
Pig sample Sample description nTPM
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 19.8
Min nTPM: 16.6
Sample A Female 17.8
Sample B Female 19.8
Sample C Male 16.6
Sample D Male 18.6
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 18.2
Min nTPM: 16.0
Sample B Female 17.0
Sample C Male 18.2
Sample D Male 16.0
Substantia nigra
nTPM: 19.2
Samples: 4

Max nTPM: 25.5
Min nTPM: 13.7
Sample A Female 25.5
Sample B Female 17.0
Sample C Male 20.5
Sample D Male 13.7
Superior colliculi
nTPM: 17.8
Samples: 4

Max nTPM: 20.5
Min nTPM: 16.4
Sample A Female 20.5
Sample B Female 17.6
Sample C Male 16.8
Sample D Male 16.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.6
Samples: 4

Max nTPM: 73.2
Min nTPM: 67.6
Sample A Male 67.6
Sample B Male 69.5
Sample C Female 72.0
Sample D Female 73.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
67978662 Antisense, RP_040923_01_E04, Mouse strain C57BL/6J (56 days, male) 5.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.