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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:118.9 nTPM
GTEx:218.9 nTPM
FANTOM5:90.0 Scaled Tags Per Million
Pig:91.1 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 118.9
Sample id Sample description nTPM
Putamen
nTPM: 118.9
2482 Female, age 94, left hemisphere 146.7
1829 Male, age 74, unknown 131.1
2466 Female, age 79, unknown 117.1
2489 Female, age 72, unknown 115.4
1937 Female, age 91, right hemisphere 114.6
2647 Male, age 75, left hemisphere 106.3
1838 Male, age 80, right hemisphere 100.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 218.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 218.9
Samples: 205

Max nTPM: 711.8
Min nTPM: 50.9
Std nTPM: 84.6
Median nTPM: 212.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 711.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 539.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 501.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 402.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 386.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 373.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 373.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 371.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 369.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 365.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 364.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 355.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 348.8
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 345.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 342.3
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 340.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 340.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 328.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 326.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 325.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 322.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 315.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 314.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 313.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 312.6
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 311.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 307.2
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 300.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 300.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 300.6
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 300.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 295.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 294.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 290.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 289.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 287.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 284.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 280.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 279.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 277.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 276.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 275.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 275.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 275.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 267.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 265.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 264.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 263.1
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 262.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 261.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 259.3
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 259.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 258.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 258.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 257.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 256.4
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 255.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 255.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 254.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 252.5
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 251.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 250.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 248.6
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 246.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 245.4
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 244.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 244.8
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 243.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 241.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 241.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 241.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 240.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 240.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 238.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 238.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 236.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 235.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 235.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 235.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 233.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 229.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 228.7
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 228.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 227.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 226.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 226.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 225.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 224.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 224.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 223.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 222.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 221.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 221.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 220.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 220.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 219.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 219.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 218.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 217.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 216.2
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 214.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 213.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 212.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 210.7
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 208.3
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 208.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 205.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 204.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 200.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 198.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 198.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 198.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 196.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 196.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 195.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 193.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 193.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 193.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 191.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 191.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 190.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 189.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 189.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 189.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 188.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 187.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 186.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 186.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 185.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 183.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 182.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 181.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 180.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 180.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 179.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 178.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 178.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 176.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 176.6
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 175.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 175.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 175.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 175.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 174.9
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 174.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 174.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 173.9
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 172.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 171.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 169.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 167.6
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 166.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 164.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 163.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 163.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 161.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 160.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 159.2
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 158.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 155.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 153.7
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 150.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 148.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 147.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 146.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 146.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 144.5
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 142.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 140.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 139.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 138.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 137.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 137.1
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 136.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 136.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 135.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 134.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 134.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 132.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 131.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 131.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 131.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 129.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 128.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 126.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 122.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 121.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 121.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 120.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 117.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 115.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 111.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 110.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 107.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 105.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 103.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 101.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 100.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 98.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 97.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 86.5
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 85.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 76.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 69.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 50.9
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 90.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 90.0
FF:10176-103C5 60 years, female 90.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.1
Pig sample Sample description nTPM
Putamen
nTPM: 91.1
Samples: 4

Max nTPM: 162.7
Min nTPM: 42.9
Sample A Female 162.7
Sample B Female 42.9
Sample C Male 70.2
Sample D Male 88.6

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