MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.4 nTPM
HPA:48.4 nTPM
GTEx:24.8 nTPM
FANTOM5:45.3 Scaled Tags Per Million
Pig:4.4 nTPM
Mouse:2.0 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.8
2019 Male, age 18, unknown 42.6
2828 Female, age 72, unknown 42.2
1830 Male, age 51, unknown 41.9
1833 Male, age 53, unknown 41.3
2411 Female, age 72, unknown 41.1
2666 Male, age 74, left hemisphere 40.6
1870 Female, age 42, unknown 40.5
1827 Male, age 72, unknown 40.1
2586 Male, age 75, left hemisphere 39.2
2219 Male, age 76, both hemispheres 38.7
Dorsal raphe nucleus
nTPM: 41.8
2298 Female, age 72, unknown 43.0
2750 Male, age 76, both hemispheres 42.1
2016 Female, age 72, unknown 41.4
1828 Male, age 53, unknown 41.3
2047 Male, age 72, unknown 41.0
Inferior colliculus
nTPM: 40.3
1890 Male, age 53, unknown 42.0
2097 Female, age 72, unknown 40.8
1848 Female, age 42, unknown 39.2
2849 Male, age 72, unknown 39.0
Median raphe nucleus
nTPM: 40.5
2220 Male, age 76, midline 40.5
Pedunculopontine tegmental nucleus
nTPM: 48.4
2338 Male, age 61, both hemispheres 65.9
2334 Male, age 80, both hemispheres 41.0
1921 Female, age 85, both hemispheres 38.2
Periaquaductal grey, anterior
nTPM: 41.1
1795 Male, age 51, unknown 42.1
1947 Male, age 18, unknown 41.1
2502 Female, age 75, unknown 40.1
Periaquaductal grey, dorsal
nTPM: 41.5
1831 Male, age 72, unknown 44.0
2464 Female, age 72, unknown 41.1
1840 Male, age 53, unknown 40.8
2850 Male, age 76, both hemispheres 40.3
Periaquaductal grey, lateral
nTPM: 44.3
2272 Male, age 74, both hemispheres 48.6
2053 Male, age 18, unknown 42.6
2140 Male, age 76, both hemispheres 41.6
Pretectal area
nTPM: 41.8
2407 Male, age 75, both hemispheres 45.9
2273 Male, age 74, both hemispheres 44.5
2316 Male, age 76, right hemisphere 42.3
1817 Female, age 42, unknown 42.2
2007 Male, age 72, unknown 41.6
1815 Male, age 53, unknown 41.4
1944 Female, age 72, unknown 41.4
2825 Male, age 18, unknown 41.4
2224 Female, age 72, unknown 40.0
1816 Male, age 51, unknown 39.8
2667 Female, age 75, unknown 39.8
Red nucleus
nTPM: 41.7
2823 Male, age 76, right hemisphere 44.0
1865 Male, age 51, unknown 42.8
1904 Male, age 53, unknown 42.6
2725 Female, age 75, unknown 42.6
2227 Male, age 72, unknown 42.3
2769 Male, age 72, unknown 42.3
2503 Female, age 72, unknown 42.0
1954 Female, age 42, unknown 41.7
2785 Male, age 18, unknown 41.2
1821 Female, age 72, unknown 40.6
2584 Male, age 75, left hemisphere 39.4
2588 Male, age 74, left hemisphere 39.3
Substantia nigra
nTPM: 41.8
2590 Female, age 75, unknown 45.5
2665 Male, age 74, both hemispheres 43.8
2583 Male, age 75, right hemisphere 43.3
1851 Male, age 51, unknown 41.6
2699 Male, age 18, unknown 41.5
1916 Female, age 42, unknown 41.1
2409 Female, age 72, unknown 40.8
2241 Male, age 72, unknown 40.7
1889 Female, age 72, unknown 40.2
1941 Male, age 53, unknown 39.9
Superior colliculus
nTPM: 41.6
2664 Male, age 75, both hemispheres 44.6
2087 Female, age 72, unknown 42.7
1995 Male, age 72, unknown 42.0
1913 Female, age 42, unknown 41.9
2587 Male, age 74, left hemisphere 41.9
2261 Male, age 18, unknown 41.3
2668 Female, age 75, unknown 40.8
1796 Male, age 53, unknown 40.7
1839 Male, age 51, unknown 40.4
1895 Male, age 76, right hemisphere 39.6
Ventral tegmental area
nTPM: 41.8
1915 Female, age 42, unknown 43.0
2021 Male, age 53, unknown 42.4
1942 Male, age 51, unknown 41.8
2218 Male, age 76, both hemispheres 41.8
2223 Female, age 72, unknown 41.1
2410 Female, age 72, unknown 40.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.8
Samples: 139

Max nTPM: 100.3
Min nTPM: 3.2
Std nTPM: 17.3
Median nTPM: 19.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 100.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 87.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 80.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 79.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 72.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 57.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 57.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 57.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 54.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 53.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 52.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.3
FF:10158-103A5 76 years, female 45.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.4
Pig sample Sample description nTPM
Midbrain
nTPM: 2.5
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.6
Sample A Female 3.0
Sample B Female 2.6
Sample C Male 2.7
Sample D Male 1.6
Periaqueductal gray
nTPM: 1.7
Samples: 3

Max nTPM: 2.2
Min nTPM: 1.3
Sample B Female 2.2
Sample C Male 1.5
Sample D Male 1.3
Substantia nigra
nTPM: 4.4
Samples: 4

Max nTPM: 9.3
Min nTPM: 2.1
Sample A Female 2.6
Sample B Female 9.3
Sample C Male 2.1
Sample D Male 3.7
Superior colliculi
nTPM: 4.1
Samples: 4

Max nTPM: 7.4
Min nTPM: 2.3
Sample A Female 4.2
Sample B Female 7.4
Sample C Male 2.3
Sample D Male 2.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.0
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.6
Sample A Male 1.9
Sample B Male 1.7
Sample C Female 1.6
Sample D Female 2.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68745102 Antisense, RP_050210_01_C05, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.