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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:95.1 nTPM
HPA:29.6 nTPM
GTEx:95.1 nTPM
FANTOM5:92.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA005434
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 29.6
overview
Male, age 65
Small intestine sample 232
nTPM: 20.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 28.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 45.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 24

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 95.1
Samples: 187

Max nTPM: 291.6
Min nTPM: 26.6
Std nTPM: 37.3
Median nTPM: 91.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 291.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 221.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 204.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 200.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 195.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 193.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 181.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 179.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 174.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 171.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 160.6
GTEX-1192X-2526-SM-59868 50-59 years, male 153.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 151.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 145.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 144.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 140.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 140.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 139.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 134.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 131.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 131.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 129.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 128.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 128.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 126.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 126.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 126.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 123.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 123.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 122.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 122.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 121.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 121.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 119.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 117.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 116.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 116.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 115.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 115.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 114.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 114.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 114.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 114.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 113.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 113.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 113.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 113.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 113.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 112.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 112.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 112.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 111.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 110.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 110.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 110.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 108.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 107.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 106.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 106.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 105.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 105.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 105.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 104.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 104.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 104.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 101.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 101.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 100.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 100.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 99.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 99.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 99.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 98.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 98.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 98.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 97.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 96.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 96.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 96.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 96.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 95.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 94.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 94.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 93.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 93.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 93.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 92.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 92.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 92.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 92.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 92.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 91.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 91.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 91.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 91.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 90.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 90.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 90.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 89.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 88.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 88.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 87.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 87.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 87.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 86.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 86.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 86.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 85.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 85.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 85.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 83.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 83.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 83.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 83.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 82.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 82.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 82.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 81.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 81.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 81.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 80.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 79.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 79.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 78.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 77.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 77.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 77.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 77.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 76.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 76.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 75.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 75.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 75.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 75.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 74.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 73.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 72.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 72.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 72.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 71.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 71.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 70.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 69.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 69.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 68.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 68.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 67.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 67.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 67.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 66.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 65.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 65.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 65.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 64.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 63.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 61.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 61.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 60.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 59.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 59.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 59.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 59.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 58.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 58.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 58.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 57.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 55.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 55.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 54.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 53.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 53.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 53.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 52.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 52.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 50.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 49.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 47.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 44.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 42.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 41.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 40.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 36.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 35.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 34.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 32.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 29.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 26.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 92.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 92.4
FF:10024-101D6 15,40,85 years, mixed 92.4

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The Human Protein Atlas project is funded
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