We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
FYN
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • FYN
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:109.9 nTPM
HPA:109.9 nTPM
GTEx:75.8 nTPM
FANTOM5:190.3 Scaled Tags Per Million
Pig:64.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 109.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 100.0
2048 Male, age 55, midline 103.3
1981 Female, age 72, midline 101.1
2816 Male, age 47, midline 100.5
2194 Female, age 79, both hemispheres 98.7
2565 Male, age 75, midline 96.2
Cervical spinal cord, dorsal horn
nTPM: 109.9
2721 Male, age 90, both hemispheres 124.1
1877 Male, age 55, unknown 118.2
2296 Male, age 66, both hemispheres 108.6
2069 Male, age 47, both hemispheres 106.2
2173 Female, age 72, unknown 102.8
2297 Male, age 75, both hemispheres 99.6
Cervical spinal cord, ventral horn
nTPM: 96.3
2098 Female, age 72, unknown 116.2
2295 Male, age 66, both hemispheres 108.6
2809 Male, age 90, both hemispheres 98.3
2068 Male, age 55, unknown 91.5
2820 Female, age 79, both hemispheres 91.4
2480 Male, age 75, both hemispheres 72.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 75.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 75.8
Samples: 159

Max nTPM: 144.7
Min nTPM: 47.1
Std nTPM: 13.7
Median nTPM: 74.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 144.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 131.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 114.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 105.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 101.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 100.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 98.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 96.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 95.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 95.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 95.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 95.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 94.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 92.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 92.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 92.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 91.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 91.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 90.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 90.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 90.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 89.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 88.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 88.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 87.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 87.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 87.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 87.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 86.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 86.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 86.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 85.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 85.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 84.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 84.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 84.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 83.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 83.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 83.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 83.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 82.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 82.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 82.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 81.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 81.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 81.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 80.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 80.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 80.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 79.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 79.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 79.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 79.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 79.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 79.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 79.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 78.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 78.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 78.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 78.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 77.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 77.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 77.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 77.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 77.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 77.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 77.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 77.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 76.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 76.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 76.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 76.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 75.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 75.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 75.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 75.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 75.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 75.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 75.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 74.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 74.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 74.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 73.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 73.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 73.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 73.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 73.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 73.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 73.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 72.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 72.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 72.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 72.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 72.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 71.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 70.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 70.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 70.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 70.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 70.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 70.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 70.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 69.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 69.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 69.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 69.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 69.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 69.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 68.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 68.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 68.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 68.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 68.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 68.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 68.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 68.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 67.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 67.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 67.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 67.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 67.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 67.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 67.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 66.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 66.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 65.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 65.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 65.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 65.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 65.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 64.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 63.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 63.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 63.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 63.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 63.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 63.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 62.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 62.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 62.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 61.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 59.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 59.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 59.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 58.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 58.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 58.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 56.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 56.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 56.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 56.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 55.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 55.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 54.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 54.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 53.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 52.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 51.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 47.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 190.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 190.3
FF:10159-103A6 76 years, female 230.2
FF:10181-103D1 60 years, female 150.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 64.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 60.3
Samples: 4

Max nTPM: 64.5
Min nTPM: 55.6
Sample A Female 55.6
Sample B Female 60.4
Sample C Male 64.5
Sample D Male 60.6
Ventral spinal cord
nTPM: 64.4
Samples: 4

Max nTPM: 66.7
Min nTPM: 62.6
Sample A Female 65.3
Sample B Female 66.7
Sample C Male 62.6
Sample D Male 63.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.