BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:66.8 nTPM
HPA:66.8 nTPM
GTEx:27.0 nTPM
FANTOM5:0.3 Scaled Tags Per Million
Pig:0.7 nTPM
Mouse:0.2 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA024353Antibody HPA066523Antibody CAB002418
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedMediumNot detected






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 66.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.7
2288 Male, age 75, left hemisphere 38.7
1781 Male, age 74, unknown 35.4
1854 Male, age 80, left hemisphere 35.0
2846 Female, age 79, unknown 29.9
2481 Female, age 94, left hemisphere 29.7
2289 Male, age 61, right hemisphere 26.4
2290 Female, age 72, unknown 25.7
1857 Female, age 85, left hemisphere 24.5
Claustrum
nTPM: 48.7
2292 Female, age 85, both hemispheres 80.0
2392 Female, age 94, both hemispheres 55.3
1956 Male, age 74, unknown 52.8
2196 Female, age 79, unknown 45.8
2568 Male, age 61, both hemispheres 42.5
2198 Male, age 80, both hemispheres 41.6
2645 Female, age 72, unknown 40.8
2284 Female, age 91, both hemispheres 39.8
2491 Male, age 75, both hemispheres 39.5
Globus pallidus, externus
nTPM: 64.9
2567 Female, age 72, unknown 93.7
2646 Male, age 61, right hemisphere 89.6
1996 Male, age 80, right hemisphere 49.1
2772 Female, age 79, unknown 46.9
2395 Male, age 75, both hemispheres 45.1
Globus pallidus, internus
nTPM: 66.8
2111 Female, age 85, right hemisphere 96.6
2566 Female, age 72, unknown 89.2
2778 Female, age 91, both hemispheres 74.6
2037 Male, age 80, right hemisphere 62.0
1818 Male, age 74, unknown 57.3
2287 Male, age 75, right hemisphere 44.1
2483 Female, age 94, right hemisphere 43.8
Nucleus accumbens
nTPM: 42.6
2391 Female, age 94, left hemisphere 78.7
2732 Male, age 80, right hemisphere 58.9
2698 Female, age 72, unknown 41.0
1806 Female, age 85, left hemisphere 38.7
1783 Male, age 74, unknown 34.2
2286 Male, age 75, left hemisphere 33.5
2824 Male, age 61, right hemisphere 33.5
1856 Female, age 91, right hemisphere 22.3
Nucleus basalis of Meynert
nTPM: 45.1
2569 Male, age 61, both hemispheres 70.0
2821 Male, age 75, both hemispheres 39.5
2484 Female, age 94, left hemisphere 36.1
2393 Male, age 80, right hemisphere 34.9
Nucleus of the diagonal band
nTPM: 21.8
1979 Male, age 74, unknown 24.5
1812 Female, age 91, both hemispheres 22.8
2029 Male, age 61, right hemisphere 20.9
2195 Female, age 85, both hemispheres 20.6
2775 Male, age 80, right hemisphere 20.2
Olfactory tubercle
nTPM: 24.6
1998 Female, age 91, both hemispheres 28.4
2856 Male, age 75, right hemisphere 24.3
1846 Male, age 80, right hemisphere 22.8
2487 Female, age 94, left hemisphere 22.8
Putamen
nTPM: 38.7
2489 Female, age 72, unknown 47.1
2647 Male, age 75, left hemisphere 46.9
1829 Male, age 74, unknown 43.1
2482 Female, age 94, left hemisphere 40.9
1937 Female, age 91, right hemisphere 36.8
2466 Female, age 79, unknown 31.6
1838 Male, age 80, right hemisphere 24.4
Septal nuclei
nTPM: 28.4
2394 Male, age 61, left hemisphere 47.4
2199 Male, age 80, right hemisphere 36.8
2059 Female, age 85, both hemispheres 27.7
2009 Female, age 91, both hemispheres 24.8
2629 Female, age 94, right hemisphere 23.9
2031 Female, age 72, unknown 20.2
1960 Male, age 74, unknown 18.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.1
Samples: 246

Max nTPM: 88.6
Min nTPM: 1.2
Std nTPM: 12.5
Median nTPM: 19.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 88.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 60.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 59.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 54.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 54.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 51.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 47.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 47.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 47.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 47.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 46.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 93.1
Min nTPM: 1.2
Std nTPM: 11.5
Median nTPM: 10.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 93.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 74.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 67.3
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 41.9
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 41.2
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 40.8
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 39.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 39.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 37.0
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 35.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 35.5
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Brain - Putamen (basal ganglia)
Average nTPM: 27.0
Samples: 205

Max nTPM: 126.6
Min nTPM: 4.2
Std nTPM: 14.3
Median nTPM: 24.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 126.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 60.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 58.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 57.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 55.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 55.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 53.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 53.6
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 53.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 53.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 53.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.1
FF:10164-103B2 76 years, female 0.1
Globus pallidus
Scaled Tags Per Million: 0.3
FF:10161-103A8 76 years, female 0.7
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.2
FF:10037-101F1 23-56 years, mixed 0.2
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.7
Pig sample Sample description nTPM
Caudate
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.6
Sample C Male 0.5
Sample D Male 0.5
Putamen
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.4
Sample A Female 1.0
Sample B Female 0.6
Sample C Male 0.4
Sample D Male 0.9
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.7
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.7
Ventral pallidum
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.5
Sample C Female 0.2
Sample D Female 0.1
Ventral forebrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69540561 Antisense, RP_050426_02_A06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69540561 Antisense, RP_050426_02_A06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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