MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.8 nTPM
HPA:53.8 nTPM
GTEx:39.5 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Pig:1.2 nTPM
Mouse:0.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.7
1830 Male, age 51, unknown 55.6
2411 Female, age 72, unknown 54.2
1833 Male, age 53, unknown 52.1
2019 Male, age 18, unknown 48.7
1870 Female, age 42, unknown 45.7
2586 Male, age 75, left hemisphere 43.8
2666 Male, age 74, left hemisphere 43.6
2828 Female, age 72, unknown 40.1
1827 Male, age 72, unknown 36.8
2219 Male, age 76, both hemispheres 36.3
Dorsal raphe nucleus
nTPM: 35.9
2750 Male, age 76, both hemispheres 58.8
2016 Female, age 72, unknown 34.8
1828 Male, age 53, unknown 34.7
2047 Male, age 72, unknown 28.5
2298 Female, age 72, unknown 22.8
Inferior colliculus
nTPM: 33.7
1890 Male, age 53, unknown 37.5
2849 Male, age 72, unknown 35.7
1848 Female, age 42, unknown 34.4
2097 Female, age 72, unknown 27.1
Median raphe nucleus
nTPM: 36.9
2220 Male, age 76, midline 36.9
Pedunculopontine tegmental nucleus
nTPM: 45.1
2338 Male, age 61, both hemispheres 54.3
2334 Male, age 80, both hemispheres 42.5
1921 Female, age 85, both hemispheres 38.5
Periaquaductal grey, anterior
nTPM: 30.7
1947 Male, age 18, unknown 33.1
1795 Male, age 51, unknown 31.2
2502 Female, age 75, unknown 27.8
Periaquaductal grey, dorsal
nTPM: 29.4
2464 Female, age 72, unknown 41.7
1831 Male, age 72, unknown 29.5
1840 Male, age 53, unknown 23.4
2850 Male, age 76, both hemispheres 22.9
Periaquaductal grey, lateral
nTPM: 30.4
2272 Male, age 74, both hemispheres 35.5
2053 Male, age 18, unknown 32.7
2140 Male, age 76, both hemispheres 23.1
Pretectal area
nTPM: 34.6
2316 Male, age 76, right hemisphere 50.4
2407 Male, age 75, both hemispheres 46.7
1815 Male, age 53, unknown 40.6
2825 Male, age 18, unknown 35.0
2667 Female, age 75, unknown 34.6
2007 Male, age 72, unknown 32.8
1817 Female, age 42, unknown 32.7
2224 Female, age 72, unknown 29.8
2273 Male, age 74, both hemispheres 28.3
1944 Female, age 72, unknown 25.2
1816 Male, age 51, unknown 24.6
Red nucleus
nTPM: 53.8
2823 Male, age 76, right hemisphere 67.2
1865 Male, age 51, unknown 64.6
2503 Female, age 72, unknown 60.2
2588 Male, age 74, left hemisphere 58.4
1904 Male, age 53, unknown 55.4
2785 Male, age 18, unknown 53.4
1821 Female, age 72, unknown 52.9
2769 Male, age 72, unknown 52.9
2227 Male, age 72, unknown 52.6
2584 Male, age 75, left hemisphere 49.7
1954 Female, age 42, unknown 39.3
2725 Female, age 75, unknown 39.3
Substantia nigra
nTPM: 36.3
2583 Male, age 75, right hemisphere 44.9
2590 Female, age 75, unknown 41.5
2409 Female, age 72, unknown 40.7
2699 Male, age 18, unknown 37.6
1889 Female, age 72, unknown 37.3
1851 Male, age 51, unknown 36.9
2241 Male, age 72, unknown 34.4
1941 Male, age 53, unknown 33.4
2665 Male, age 74, both hemispheres 32.2
1916 Female, age 42, unknown 23.6
Superior colliculus
nTPM: 43.0
1913 Female, age 42, unknown 70.5
1995 Male, age 72, unknown 54.5
2668 Female, age 75, unknown 49.6
1895 Male, age 76, right hemisphere 48.3
1839 Male, age 51, unknown 41.8
2587 Male, age 74, left hemisphere 40.2
2664 Male, age 75, both hemispheres 33.5
1796 Male, age 53, unknown 32.1
2087 Female, age 72, unknown 31.7
2261 Male, age 18, unknown 27.9
Ventral tegmental area
nTPM: 38.7
2223 Female, age 72, unknown 48.3
2410 Female, age 72, unknown 45.5
2021 Male, age 53, unknown 37.4
2218 Male, age 76, both hemispheres 36.7
1942 Male, age 51, unknown 35.0
1915 Female, age 42, unknown 29.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.5
Samples: 139

Max nTPM: 191.9
Min nTPM: 3.3
Std nTPM: 28.7
Median nTPM: 32.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 191.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 191.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 122.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 116.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 112.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 106.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 89.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 86.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 84.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 77.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 77.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.2
Pig sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.5
Sample A Female 1.3
Sample B Female 0.8
Sample C Male 0.5
Sample D Male 0.5
Periaqueductal gray
nTPM: 0.8
Samples: 3

Max nTPM: 0.9
Min nTPM: 0.7
Sample B Female 0.7
Sample C Male 0.7
Sample D Male 0.9
Substantia nigra
nTPM: 1.3
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 1.5
Sample C Male 1.0
Sample D Male 1.6
Superior colliculi
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.6
Sample A Female 0.7
Sample B Female 0.8
Sample C Male 0.6
Sample D Male 0.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.5
Sample C Female 0.0
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69540561 Antisense, RP_050426_02_A06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.