HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.7 nTPM
HPA:50.7 nTPM
GTEx:59.0 nTPM
FANTOM5:100.7 Scaled Tags Per Million
Pig:76.7 nTPM
Mouse:106.0 nTPM
Allen mouse:17.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.7
Sample id Sample description nTPM
Hippocampus
nTPM: 50.7
2529 Female, age 94, left hemisphere 52.6
2621 Female, age 67, right hemisphere 52.0
2148 Female, age 91, left hemisphere 51.3
1911 Female, age 85, right hemisphere 50.0
1898 Male, age 80, left hemisphere 49.3
1855 Male, age 76, left hemisphere 49.2
Dentate gyrus
nTPM: 48.6
2530 Female, age 94, left hemisphere 53.2
1927 Female, age 91, both hemispheres 50.1
2246 Female, age 85, both hemispheres 49.2
2531 Female, age 67, both hemispheres 47.3
2010 Male, age 76, both hemispheres 47.2
2528 Male, age 74, both hemispheres 44.3
Entorhinal gyrus
nTPM: 49.0
1938 Female, age 85, left hemisphere 51.4
2686 Male, age 75, right hemisphere 51.2
2117 Female, age 91, right hemisphere 50.9
2613 Female, age 94, left hemisphere 47.6
1787 Male, age 76, left hemisphere 46.8
2764 Male, age 80, right hemisphere 46.1
Hippocampus, CA1
nTPM: 50.6
2045 Male, age 76, both hemispheres 54.6
2749 Male, age 80, left hemisphere 54.5
1873 Female, age 85, both hemispheres 51.3
2527 Male, age 74, both hemispheres 49.1
2082 Female, age 91, right hemisphere 43.4
Hippocampus, CA2
nTPM: 48.4
1892 Male, age 76, both hemispheres 55.3
1963 Male, age 80, left hemisphere 54.3
2437 Female, age 94, left hemisphere 46.8
1940 Female, age 85, left hemisphere 45.2
2113 Female, age 91, right hemisphere 44.8
2249 Male, age 74, both hemispheres 44.0
Hippocampus, CA3
nTPM: 48.1
2137 Male, age 80, left hemisphere 54.7
1891 Female, age 85, both hemispheres 52.4
1867 Male, age 76, both hemispheres 48.0
2620 Female, age 94, left hemisphere 45.9
2861 Female, age 67, both hemispheres 45.1
2436 Male, age 74, both hemispheres 42.5
Parahippocampal cortex
nTPM: 47.4
1850 Male, age 80, both hemispheres 51.6
2532 Female, age 72, left hemisphere 50.2
2692 Male, age 74, both hemispheres 48.7
1933 Female, age 85, both hemispheres 47.5
2245 Female, age 91, both hemispheres 47.2
2622 Female, age 67, right hemisphere 46.4
1990 Female, age 91, right hemisphere 46.2
2018 Male, age 76, both hemispheres 45.6
2250 Female, age 67, right hemisphere 45.3
2693 Female, age 94, both hemispheres 45.3
Perirhinal gyrus
nTPM: 49.4
2848 Male, age 76, right hemisphere 52.1
1841 Female, age 85, right hemisphere 50.8
1847 Female, age 91, left hemisphere 49.5
1794 Male, age 80, right hemisphere 49.2
2521 Female, age 94, right hemisphere 45.4
Subiculum
nTPM: 48.6
2438 Female, age 94, left hemisphere 54.2
1977 Female, age 85, both hemispheres 51.0
1901 Male, age 80, both hemispheres 50.1
2619 Male, age 74, both hemispheres 46.7
2729 Female, age 91, right hemisphere 45.7
2042 Male, age 76, both hemispheres 44.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 59.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 59.0
Samples: 197

Max nTPM: 100.5
Min nTPM: 15.7
Std nTPM: 11.0
Median nTPM: 57.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 100.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 97.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 97.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 97.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 88.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 83.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 81.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 80.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 80.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 79.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 79.7
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 100.7
FF:10169-103B7 60 years, female 105.6
FF:10153-102I9 76 years, female 95.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 76.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 70.5
Samples: 4

Max nTPM: 77.3
Min nTPM: 66.2
Sample A Female 77.3
Sample B Female 71.5
Sample C Male 67.1
Sample D Male 66.2
Entorhinal cortex
nTPM: 76.7
Samples: 4

Max nTPM: 81.7
Min nTPM: 69.8
Sample A Female 76.0
Sample B Female 81.7
Sample C Male 79.4
Sample D Male 69.8
Subiculum
nTPM: 71.6
Samples: 4

Max nTPM: 93.3
Min nTPM: 63.0
Sample A Female 93.3
Sample B Female 66.8
Sample C Male 63.0
Sample D Male 63.2
Ventral hippocampus
nTPM: 63.5
Samples: 4

Max nTPM: 72.0
Min nTPM: 59.9
Sample A Female 60.0
Sample B Female 59.9
Sample C Male 61.9
Sample D Male 72.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 106.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 106.0
Samples: 4

Max nTPM: 114.1
Min nTPM: 98.1
Sample A Male 102.6
Sample B Male 114.1
Sample C Female 98.1
Sample D Female 109.2
Hippocampal formation
nTPM: 103.4
Samples: 4

Max nTPM: 112.5
Min nTPM: 93.5
Sample A Male 112.5
Sample B Male 109.8
Sample C Female 93.5
Sample D Female 97.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.8
67792192 Antisense, RP_040920_01_C10, Mouse strain C57BL/6J (56 days, male) 18.4
70743906 Antisense, RP_050725_02_A10, Mouse strain C57BL/6J (56 days, male) 17.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.