MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.8 nTPM
HPA:52.8 nTPM
GTEx:61.7 nTPM
FANTOM5:78.6 Scaled Tags Per Million
Pig:63.9 nTPM
Mouse:77.8 nTPM
Allen mouse:6.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.2
2586 Male, age 75, left hemisphere 56.5
2666 Male, age 74, left hemisphere 55.2
1870 Female, age 42, unknown 55.1
1830 Male, age 51, unknown 52.8
2219 Male, age 76, both hemispheres 52.1
2828 Female, age 72, unknown 51.7
1833 Male, age 53, unknown 51.2
1827 Male, age 72, unknown 51.1
2411 Female, age 72, unknown 49.8
2019 Male, age 18, unknown 46.2
Dorsal raphe nucleus
nTPM: 46.1
2016 Female, age 72, unknown 49.8
2750 Male, age 76, both hemispheres 47.2
1828 Male, age 53, unknown 45.7
2047 Male, age 72, unknown 45.4
2298 Female, age 72, unknown 42.6
Inferior colliculus
nTPM: 51.6
2849 Male, age 72, unknown 55.0
1848 Female, age 42, unknown 52.0
1890 Male, age 53, unknown 50.4
2097 Female, age 72, unknown 49.1
Median raphe nucleus
nTPM: 44.9
2220 Male, age 76, midline 44.9
Pedunculopontine tegmental nucleus
nTPM: 46.9
2334 Male, age 80, both hemispheres 50.0
1921 Female, age 85, both hemispheres 48.6
2338 Male, age 61, both hemispheres 42.0
Periaquaductal grey, anterior
nTPM: 50.4
1947 Male, age 18, unknown 54.6
2502 Female, age 75, unknown 50.2
1795 Male, age 51, unknown 46.6
Periaquaductal grey, dorsal
nTPM: 50.0
1840 Male, age 53, unknown 52.8
2464 Female, age 72, unknown 49.5
1831 Male, age 72, unknown 49.4
2850 Male, age 76, both hemispheres 48.3
Periaquaductal grey, lateral
nTPM: 46.0
2053 Male, age 18, unknown 50.9
2140 Male, age 76, both hemispheres 44.7
2272 Male, age 74, both hemispheres 42.5
Pretectal area
nTPM: 49.4
1815 Male, age 53, unknown 55.0
1817 Female, age 42, unknown 52.2
2825 Male, age 18, unknown 51.6
1816 Male, age 51, unknown 50.2
2407 Male, age 75, both hemispheres 49.6
2007 Male, age 72, unknown 49.2
1944 Female, age 72, unknown 49.0
2224 Female, age 72, unknown 47.8
2667 Female, age 75, unknown 47.5
2316 Male, age 76, right hemisphere 46.6
2273 Male, age 74, both hemispheres 44.9
Red nucleus
nTPM: 52.8
2503 Female, age 72, unknown 56.9
2588 Male, age 74, left hemisphere 56.6
1865 Male, age 51, unknown 54.5
1821 Female, age 72, unknown 54.3
1904 Male, age 53, unknown 54.0
2725 Female, age 75, unknown 52.7
1954 Female, age 42, unknown 52.2
2227 Male, age 72, unknown 51.5
2769 Male, age 72, unknown 51.4
2584 Male, age 75, left hemisphere 50.1
2823 Male, age 76, right hemisphere 50.0
2785 Male, age 18, unknown 48.5
Substantia nigra
nTPM: 49.0
2699 Male, age 18, unknown 52.4
2590 Female, age 75, unknown 50.7
1889 Female, age 72, unknown 50.5
2665 Male, age 74, both hemispheres 50.0
2583 Male, age 75, right hemisphere 49.9
1851 Male, age 51, unknown 49.4
2241 Male, age 72, unknown 47.9
2409 Female, age 72, unknown 47.9
1916 Female, age 42, unknown 46.8
1941 Male, age 53, unknown 44.3
Superior colliculus
nTPM: 50.7
2587 Male, age 74, left hemisphere 54.4
1995 Male, age 72, unknown 53.2
1839 Male, age 51, unknown 52.0
1913 Female, age 42, unknown 52.0
1895 Male, age 76, right hemisphere 51.7
2668 Female, age 75, unknown 50.9
2664 Male, age 75, both hemispheres 49.4
1796 Male, age 53, unknown 49.2
2087 Female, age 72, unknown 48.2
2261 Male, age 18, unknown 45.9
Ventral tegmental area
nTPM: 48.2
2223 Female, age 72, unknown 52.1
1915 Female, age 42, unknown 48.9
2410 Female, age 72, unknown 48.3
2021 Male, age 53, unknown 47.6
1942 Male, age 51, unknown 47.0
2218 Male, age 76, both hemispheres 45.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.7
Samples: 139

Max nTPM: 104.4
Min nTPM: 31.4
Std nTPM: 15.6
Median nTPM: 59.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 104.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 97.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 97.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 96.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 92.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 91.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 91.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 90.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 90.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 90.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 90.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.6
FF:10158-103A5 76 years, female 78.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.9
Pig sample Sample description nTPM
Midbrain
nTPM: 64.0
Samples: 4

Max nTPM: 70.1
Min nTPM: 57.8
Sample A Female 70.1
Sample B Female 57.8
Sample C Male 61.9
Sample D Male 66.0
Periaqueductal gray
nTPM: 54.9
Samples: 3

Max nTPM: 58.0
Min nTPM: 53.0
Sample B Female 53.0
Sample C Male 58.0
Sample D Male 53.6
Substantia nigra
nTPM: 54.3
Samples: 4

Max nTPM: 61.4
Min nTPM: 49.9
Sample A Female 61.4
Sample B Female 50.3
Sample C Male 55.4
Sample D Male 49.9
Superior colliculi
nTPM: 57.8
Samples: 4

Max nTPM: 65.6
Min nTPM: 46.7
Sample A Female 65.6
Sample B Female 46.7
Sample C Male 58.2
Sample D Male 60.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.8
Samples: 4

Max nTPM: 83.8
Min nTPM: 73.9
Sample A Male 78.4
Sample B Male 73.9
Sample C Female 83.8
Sample D Female 75.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
70743906 Antisense, RP_050725_02_A10, Mouse strain C57BL/6J (56 days, male) 9.8
67792192 Antisense, RP_040920_01_C10, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.