MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:431.8 nTPM
HPA:431.8 nTPM
GTEx:595.8 nTPM
FANTOM5:2059.8 Scaled Tags Per Million
Pig:343.7 nTPM
Mouse:9.5 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 431.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 286.6
2666 Male, age 74, left hemisphere 342.2
1830 Male, age 51, unknown 335.0
2828 Female, age 72, unknown 319.3
1870 Female, age 42, unknown 302.0
1833 Male, age 53, unknown 293.6
2019 Male, age 18, unknown 280.9
2411 Female, age 72, unknown 268.1
1827 Male, age 72, unknown 256.5
2219 Male, age 76, both hemispheres 251.0
2586 Male, age 75, left hemisphere 217.7
Dorsal raphe nucleus
nTPM: 342.5
2016 Female, age 72, unknown 402.3
2298 Female, age 72, unknown 391.3
1828 Male, age 53, unknown 336.6
2750 Male, age 76, both hemispheres 298.2
2047 Male, age 72, unknown 284.3
Inferior colliculus
nTPM: 301.9
2097 Female, age 72, unknown 320.0
2849 Male, age 72, unknown 298.1
1890 Male, age 53, unknown 295.4
1848 Female, age 42, unknown 294.1
Median raphe nucleus
nTPM: 324.2
2220 Male, age 76, midline 324.2
Pedunculopontine tegmental nucleus
nTPM: 431.8
2338 Male, age 61, both hemispheres 677.2
2334 Male, age 80, both hemispheres 355.4
1921 Female, age 85, both hemispheres 262.9
Periaquaductal grey, anterior
nTPM: 284.0
1795 Male, age 51, unknown 314.2
2502 Female, age 75, unknown 275.6
1947 Male, age 18, unknown 262.1
Periaquaductal grey, dorsal
nTPM: 361.8
1831 Male, age 72, unknown 454.2
2850 Male, age 76, both hemispheres 394.3
1840 Male, age 53, unknown 305.1
2464 Female, age 72, unknown 293.7
Periaquaductal grey, lateral
nTPM: 388.5
2272 Male, age 74, both hemispheres 427.4
2140 Male, age 76, both hemispheres 370.7
2053 Male, age 18, unknown 367.4
Pretectal area
nTPM: 306.5
2224 Female, age 72, unknown 366.9
2407 Male, age 75, both hemispheres 365.0
2273 Male, age 74, both hemispheres 354.1
2316 Male, age 76, right hemisphere 352.2
2825 Male, age 18, unknown 297.8
2667 Female, age 75, unknown 289.8
1817 Female, age 42, unknown 287.3
1815 Male, age 53, unknown 286.4
1944 Female, age 72, unknown 282.5
2007 Male, age 72, unknown 271.8
1816 Male, age 51, unknown 217.4
Red nucleus
nTPM: 309.1
1865 Male, age 51, unknown 372.8
2503 Female, age 72, unknown 363.3
2725 Female, age 75, unknown 329.4
2823 Male, age 76, right hemisphere 316.8
2227 Male, age 72, unknown 316.1
2769 Male, age 72, unknown 313.9
1904 Male, age 53, unknown 313.2
2785 Male, age 18, unknown 310.8
1954 Female, age 42, unknown 296.9
1821 Female, age 72, unknown 295.6
2584 Male, age 75, left hemisphere 248.4
2588 Male, age 74, left hemisphere 231.6
Substantia nigra
nTPM: 376.4
2699 Male, age 18, unknown 608.4
2665 Male, age 74, both hemispheres 453.9
2590 Female, age 75, unknown 442.0
1916 Female, age 42, unknown 350.9
1851 Male, age 51, unknown 346.7
1941 Male, age 53, unknown 342.4
2583 Male, age 75, right hemisphere 329.7
2409 Female, age 72, unknown 328.3
2241 Male, age 72, unknown 302.8
1889 Female, age 72, unknown 259.4
Superior colliculus
nTPM: 322.3
1913 Female, age 42, unknown 464.4
1995 Male, age 72, unknown 416.7
2587 Male, age 74, left hemisphere 394.4
2664 Male, age 75, both hemispheres 311.7
1839 Male, age 51, unknown 307.6
2087 Female, age 72, unknown 291.3
1796 Male, age 53, unknown 287.8
2668 Female, age 75, unknown 259.4
1895 Male, age 76, right hemisphere 248.5
2261 Male, age 18, unknown 241.2
Ventral tegmental area
nTPM: 375.7
2021 Male, age 53, unknown 496.2
1915 Female, age 42, unknown 378.5
2218 Male, age 76, both hemispheres 365.4
1942 Male, age 51, unknown 357.0
2410 Female, age 72, unknown 332.0
2223 Female, age 72, unknown 324.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 595.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 595.8
Samples: 139

Max nTPM: 2397.1
Min nTPM: 82.4
Std nTPM: 433.2
Median nTPM: 496.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2397.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 2108.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2075.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 1771.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1589.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1535.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1528.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1415.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 1339.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1314.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1309.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2059.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2059.8
FF:10158-103A5 76 years, female 2059.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 343.7
Pig sample Sample description nTPM
Midbrain
nTPM: 279.6
Samples: 4

Max nTPM: 465.9
Min nTPM: 173.2
Sample A Female 465.9
Sample B Female 269.2
Sample C Male 210.0
Sample D Male 173.2
Periaqueductal gray
nTPM: 229.5
Samples: 3

Max nTPM: 276.3
Min nTPM: 191.3
Sample B Female 220.8
Sample C Male 276.3
Sample D Male 191.3
Substantia nigra
nTPM: 343.7
Samples: 4

Max nTPM: 446.4
Min nTPM: 248.1
Sample A Female 350.8
Sample B Female 446.4
Sample C Male 248.1
Sample D Male 329.6
Superior colliculi
nTPM: 295.2
Samples: 4

Max nTPM: 337.0
Min nTPM: 263.6
Sample A Female 337.0
Sample B Female 297.5
Sample C Male 263.6
Sample D Male 282.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 15.6
Min nTPM: 4.8
Sample A Male 15.6
Sample B Male 10.5
Sample C Female 4.8
Sample D Female 6.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
67979029 Antisense, RP_040923_02_A10, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.