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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:111.1 nTPM
HPA:111.1 nTPM
GTEx:143.0 nTPM
FANTOM5:106.4 Scaled Tags Per Million
Pig:39.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 111.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 108.4
1981 Female, age 72, midline 119.2
2816 Male, age 47, midline 109.1
2048 Male, age 55, midline 108.1
2194 Female, age 79, both hemispheres 103.6
2565 Male, age 75, midline 101.7
Cervical spinal cord, dorsal horn
nTPM: 110.3
2173 Female, age 72, unknown 127.7
2296 Male, age 66, both hemispheres 127.3
2069 Male, age 47, both hemispheres 107.7
1877 Male, age 55, unknown 105.6
2721 Male, age 90, both hemispheres 96.8
2297 Male, age 75, both hemispheres 96.6
Cervical spinal cord, ventral horn
nTPM: 111.1
2098 Female, age 72, unknown 125.1
2809 Male, age 90, both hemispheres 113.7
2480 Male, age 75, both hemispheres 112.4
2068 Male, age 55, unknown 108.1
2295 Male, age 66, both hemispheres 106.1
2820 Female, age 79, both hemispheres 101.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 143.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 143.0
Samples: 159

Max nTPM: 213.5
Min nTPM: 75.2
Std nTPM: 26.6
Median nTPM: 146.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 213.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 209.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 199.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 192.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 191.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 189.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 188.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 187.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 186.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 186.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 184.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 182.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 177.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 177.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 174.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 173.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 172.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 172.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 172.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 172.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 170.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 168.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 168.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 167.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 167.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 166.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 165.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 165.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 165.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 165.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 164.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 164.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 163.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 163.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 162.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 162.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 161.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 161.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 160.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 160.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 160.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 160.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 160.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 160.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 158.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 158.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 157.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 157.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 157.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 156.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 156.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 156.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 156.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 155.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 155.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 155.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 153.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 153.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 153.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 153.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 153.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 152.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 152.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 152.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 151.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 151.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 150.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 150.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 150.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 149.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 149.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 149.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 149.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 149.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 148.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 148.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 148.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 147.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 147.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 146.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 145.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 145.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 144.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 144.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 144.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 143.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 143.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 142.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 141.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 141.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 140.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 140.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 139.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 138.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 138.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 138.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 138.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 138.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 138.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 138.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 137.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 136.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 135.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 135.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 135.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 134.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 133.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 131.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 130.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 129.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 129.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 129.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 128.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 128.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 127.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 126.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 125.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 125.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 125.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 125.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 124.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 123.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 123.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 122.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 121.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 120.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 119.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 118.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 116.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 116.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 115.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 115.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 113.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 113.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 112.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 110.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 110.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 108.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 107.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 107.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 106.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 105.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 105.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 105.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 103.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 102.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 102.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 101.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 100.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 98.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 96.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 95.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 93.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 93.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 92.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 91.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 88.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 87.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 75.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 106.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 106.4
FF:10181-103D1 60 years, female 111.5
FF:10159-103A6 76 years, female 101.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 37.5
Samples: 4

Max nTPM: 42.6
Min nTPM: 34.2
Sample A Female 42.6
Sample B Female 34.2
Sample C Male 34.2
Sample D Male 39.1
Ventral spinal cord
nTPM: 39.1
Samples: 4

Max nTPM: 41.7
Min nTPM: 35.4
Sample A Female 38.3
Sample B Female 40.9
Sample C Male 41.7
Sample D Male 35.4

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