BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:45.8 nTPM
HPA:45.8 nTPM
GTEx:38.0 nTPM
FANTOM5:173.3 Scaled Tags Per Million
Pig:59.7 nTPM
Mouse:54.6 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA019669Antibody HPA024235Antibody HPA024691Antibody CAB004549
Glial cells HighNot detectedMediumNot detected
Neuronal cells HighMediumMediumMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.4
2846 Female, age 79, unknown 42.4
2481 Female, age 94, left hemisphere 39.9
1854 Male, age 80, left hemisphere 37.7
2288 Male, age 75, left hemisphere 37.5
2290 Female, age 72, unknown 36.7
1857 Female, age 85, left hemisphere 34.1
1781 Male, age 74, unknown 32.6
2289 Male, age 61, right hemisphere 30.5
Claustrum
nTPM: 38.9
2491 Male, age 75, both hemispheres 43.3
2292 Female, age 85, both hemispheres 42.4
1956 Male, age 74, unknown 40.0
2198 Male, age 80, both hemispheres 39.8
2392 Female, age 94, both hemispheres 39.0
2196 Female, age 79, unknown 38.0
2568 Male, age 61, both hemispheres 37.0
2284 Female, age 91, both hemispheres 35.3
2645 Female, age 72, unknown 35.1
Globus pallidus, externus
nTPM: 45.6
2395 Male, age 75, both hemispheres 48.1
2567 Female, age 72, unknown 48.0
2646 Male, age 61, right hemisphere 45.3
2772 Female, age 79, unknown 43.5
1996 Male, age 80, right hemisphere 43.2
Globus pallidus, internus
nTPM: 45.8
2287 Male, age 75, right hemisphere 49.8
2111 Female, age 85, right hemisphere 48.4
2483 Female, age 94, right hemisphere 47.7
2566 Female, age 72, unknown 44.8
2778 Female, age 91, both hemispheres 44.5
1818 Male, age 74, unknown 44.4
2037 Male, age 80, right hemisphere 41.1
Nucleus accumbens
nTPM: 36.6
2698 Female, age 72, unknown 41.4
2391 Female, age 94, left hemisphere 41.2
1856 Female, age 91, right hemisphere 38.1
2286 Male, age 75, left hemisphere 37.3
1806 Female, age 85, left hemisphere 34.5
1783 Male, age 74, unknown 34.0
2732 Male, age 80, right hemisphere 33.7
2824 Male, age 61, right hemisphere 32.8
Nucleus basalis of Meynert
nTPM: 42.4
2569 Male, age 61, both hemispheres 49.3
2821 Male, age 75, both hemispheres 42.9
2393 Male, age 80, right hemisphere 41.5
2484 Female, age 94, left hemisphere 36.0
Nucleus of the diagonal band
nTPM: 36.8
2195 Female, age 85, both hemispheres 39.2
1812 Female, age 91, both hemispheres 38.8
2775 Male, age 80, right hemisphere 37.6
2029 Male, age 61, right hemisphere 36.0
1979 Male, age 74, unknown 32.3
Olfactory tubercle
nTPM: 37.6
1846 Male, age 80, right hemisphere 42.1
1998 Female, age 91, both hemispheres 37.6
2856 Male, age 75, right hemisphere 35.8
2487 Female, age 94, left hemisphere 34.8
Putamen
nTPM: 39.7
2647 Male, age 75, left hemisphere 45.6
1829 Male, age 74, unknown 44.5
2482 Female, age 94, left hemisphere 40.2
2489 Female, age 72, unknown 39.3
2466 Female, age 79, unknown 36.5
1838 Male, age 80, right hemisphere 36.1
1937 Female, age 91, right hemisphere 35.5
Septal nuclei
nTPM: 34.8
1960 Male, age 74, unknown 37.9
2629 Female, age 94, right hemisphere 37.5
2031 Female, age 72, unknown 36.9
2199 Male, age 80, right hemisphere 35.1
2009 Female, age 91, both hemispheres 33.5
2059 Female, age 85, both hemispheres 31.9
2394 Male, age 61, left hemisphere 30.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.4
Samples: 246

Max nTPM: 62.3
Min nTPM: 22.5
Std nTPM: 6.0
Median nTPM: 33.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 62.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 55.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 51.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 51.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 51.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 50.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 49.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 49.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 46.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 46.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 45.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.1
Samples: 246

Max nTPM: 77.1
Min nTPM: 19.1
Std nTPM: 7.2
Median nTPM: 31.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 77.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 67.5
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 60.2
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 60.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 56.7
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 49.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 48.5
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 48.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 46.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 45.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 45.6
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Brain - Putamen (basal ganglia)
Average nTPM: 38.0
Samples: 205

Max nTPM: 77.6
Min nTPM: 23.2
Std nTPM: 8.4
Median nTPM: 36.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 77.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 71.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 69.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 69.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 68.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 63.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 60.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 58.2
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 55.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 54.7
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 54.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 97.5
FF:10164-103B2 76 years, female 97.5
Globus pallidus
Scaled Tags Per Million: 173.3
FF:10175-103C4 60 years, female 193.3
FF:10161-103A8 76 years, female 153.3
Nucleus accumbens
Scaled Tags Per Million: 90.6
FF:10037-101F1 23-56 years, mixed 90.6
Putamen
Scaled Tags Per Million: 128.4
FF:10176-103C5 60 years, female 128.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 59.7
Pig sample Sample description nTPM
Caudate
nTPM: 47.4
Samples: 4

Max nTPM: 51.8
Min nTPM: 43.9
Sample A Female 47.2
Sample B Female 43.9
Sample C Male 51.8
Sample D Male 46.7
Putamen
nTPM: 59.7
Samples: 4

Max nTPM: 75.6
Min nTPM: 49.8
Sample A Female 56.1
Sample B Female 49.8
Sample C Male 75.6
Sample D Male 57.4
Septum
nTPM: 52.6
Samples: 4

Max nTPM: 60.6
Min nTPM: 47.3
Sample A Female 53.0
Sample B Female 47.3
Sample C Male 60.6
Sample D Male 49.4
Ventral pallidum
nTPM: 52.8
Samples: 4

Max nTPM: 58.6
Min nTPM: 49.2
Sample A Female 53.4
Sample B Female 49.2
Sample C Male 58.6
Sample D Male 50.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 54.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.6
Samples: 4

Max nTPM: 56.2
Min nTPM: 51.8
Sample A Male 56.2
Sample B Male 51.8
Sample C Female 55.7
Sample D Female 54.6
Septum
nTPM: 50.1
Samples: 4

Max nTPM: 55.6
Min nTPM: 45.3
Sample A Male 51.7
Sample B Male 45.3
Sample C Female 47.8
Sample D Female 55.6
Ventral forebrain
nTPM: 51.3
Samples: 4

Max nTPM: 55.5
Min nTPM: 43.3
Sample A Male 51.6
Sample B Male 54.8
Sample C Female 43.3
Sample D Female 55.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
70812877 Antisense, RP_050712_02_G09, Mouse strain C57BL/6J (56 days, male) 1.0
71920504 Antisense, RP_050915_02_C01, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.7
71920504 Antisense, RP_050915_02_C01, Mouse strain C57BL/6J (56 days, male) 0.8
70812877 Antisense, RP_050712_02_G09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

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