MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:81.1 nTPM
HPA:81.1 nTPM
GTEx:93.9 nTPM
FANTOM5:174.6 Scaled Tags Per Million
Pig:77.6 nTPM
Mouse:197.8 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.4
2666 Male, age 74, left hemisphere 85.9
2411 Female, age 72, unknown 75.6
2019 Male, age 18, unknown 73.6
2219 Male, age 76, both hemispheres 71.1
1870 Female, age 42, unknown 69.1
1827 Male, age 72, unknown 68.5
1833 Male, age 53, unknown 68.3
1830 Male, age 51, unknown 67.5
2586 Male, age 75, left hemisphere 62.9
2828 Female, age 72, unknown 61.9
Dorsal raphe nucleus
nTPM: 72.5
1828 Male, age 53, unknown 78.5
2047 Male, age 72, unknown 77.4
2298 Female, age 72, unknown 73.5
2750 Male, age 76, both hemispheres 71.7
2016 Female, age 72, unknown 61.2
Inferior colliculus
nTPM: 69.0
2849 Male, age 72, unknown 70.7
1848 Female, age 42, unknown 69.4
2097 Female, age 72, unknown 69.1
1890 Male, age 53, unknown 66.7
Median raphe nucleus
nTPM: 78.5
2220 Male, age 76, midline 78.5
Pedunculopontine tegmental nucleus
nTPM: 73.7
2334 Male, age 80, both hemispheres 81.9
1921 Female, age 85, both hemispheres 73.3
2338 Male, age 61, both hemispheres 65.8
Periaquaductal grey, anterior
nTPM: 65.8
1947 Male, age 18, unknown 69.3
2502 Female, age 75, unknown 64.7
1795 Male, age 51, unknown 63.5
Periaquaductal grey, dorsal
nTPM: 63.2
2850 Male, age 76, both hemispheres 66.8
1840 Male, age 53, unknown 64.0
2464 Female, age 72, unknown 61.6
1831 Male, age 72, unknown 60.5
Periaquaductal grey, lateral
nTPM: 61.8
2272 Male, age 74, both hemispheres 63.7
2140 Male, age 76, both hemispheres 63.0
2053 Male, age 18, unknown 58.8
Pretectal area
nTPM: 68.8
2007 Male, age 72, unknown 78.3
1817 Female, age 42, unknown 77.9
1944 Female, age 72, unknown 73.3
1816 Male, age 51, unknown 71.3
1815 Male, age 53, unknown 69.3
2224 Female, age 72, unknown 68.8
2667 Female, age 75, unknown 67.5
2825 Male, age 18, unknown 65.7
2316 Male, age 76, right hemisphere 64.1
2407 Male, age 75, both hemispheres 62.5
2273 Male, age 74, both hemispheres 58.4
Red nucleus
nTPM: 68.0
1821 Female, age 72, unknown 78.9
2725 Female, age 75, unknown 70.9
2785 Male, age 18, unknown 70.9
1954 Female, age 42, unknown 67.9
2503 Female, age 72, unknown 67.7
1865 Male, age 51, unknown 67.3
2227 Male, age 72, unknown 66.2
2769 Male, age 72, unknown 65.6
2584 Male, age 75, left hemisphere 65.5
1904 Male, age 53, unknown 65.2
2823 Male, age 76, right hemisphere 65.2
2588 Male, age 74, left hemisphere 64.5
Substantia nigra
nTPM: 81.1
1916 Female, age 42, unknown 107.2
1851 Male, age 51, unknown 88.4
1941 Male, age 53, unknown 87.6
2241 Male, age 72, unknown 84.6
2699 Male, age 18, unknown 80.0
1889 Female, age 72, unknown 79.6
2409 Female, age 72, unknown 77.2
2665 Male, age 74, both hemispheres 73.9
2583 Male, age 75, right hemisphere 68.4
2590 Female, age 75, unknown 64.3
Superior colliculus
nTPM: 64.6
2668 Female, age 75, unknown 78.4
1895 Male, age 76, right hemisphere 70.6
1796 Male, age 53, unknown 66.7
1839 Male, age 51, unknown 66.5
2087 Female, age 72, unknown 65.9
2587 Male, age 74, left hemisphere 65.1
2261 Male, age 18, unknown 61.0
1913 Female, age 42, unknown 59.2
2664 Male, age 75, both hemispheres 56.3
1995 Male, age 72, unknown 56.0
Ventral tegmental area
nTPM: 76.2
1915 Female, age 42, unknown 85.5
2410 Female, age 72, unknown 85.3
2218 Male, age 76, both hemispheres 79.3
2223 Female, age 72, unknown 72.4
1942 Male, age 51, unknown 69.0
2021 Male, age 53, unknown 65.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 93.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.9
Samples: 139

Max nTPM: 236.5
Min nTPM: 51.8
Std nTPM: 36.8
Median nTPM: 82.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 236.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 232.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 212.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 187.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 183.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 181.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 179.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 171.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 162.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 161.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 152.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 174.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 174.6
FF:10158-103A5 76 years, female 174.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 77.6
Pig sample Sample description nTPM
Midbrain
nTPM: 72.5
Samples: 4

Max nTPM: 96.2
Min nTPM: 50.3
Sample A Female 65.5
Sample B Female 50.3
Sample C Male 96.2
Sample D Male 78.1
Periaqueductal gray
nTPM: 50.3
Samples: 3

Max nTPM: 61.8
Min nTPM: 42.7
Sample B Female 46.5
Sample C Male 61.8
Sample D Male 42.7
Substantia nigra
nTPM: 60.0
Samples: 4

Max nTPM: 80.9
Min nTPM: 39.2
Sample A Female 80.9
Sample B Female 47.5
Sample C Male 72.5
Sample D Male 39.2
Superior colliculi
nTPM: 77.6
Samples: 4

Max nTPM: 103.7
Min nTPM: 47.4
Sample A Female 87.8
Sample B Female 47.4
Sample C Male 103.7
Sample D Male 71.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 197.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 197.8
Samples: 4

Max nTPM: 204.8
Min nTPM: 190.4
Sample A Male 204.8
Sample B Male 197.2
Sample C Female 190.4
Sample D Female 198.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
69873403 Antisense, RP_050512_01_B11, Mouse strain C57BL/6J (56 days, male) 12.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.