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GABARAPL2
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:282.4 nTPM
HPA:282.4 nTPM
FANTOM5:170.8 Scaled Tags Per Million
Pig:340.9 nTPM
Mouse:214.9 nTPM
Allen mouse:6.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 282.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 258.9
2032 Female, age 42, unknown 267.2
2497 Male, age 66, unknown 257.8
2396 Male, age 61, right hemisphere 251.8
Centromedial thalamic nucleus
nTPM: 259.4
2401 Male, age 76, right hemisphere 291.9
2279 Female, age 85, left hemisphere 226.9
Habenula
nTPM: 281.7
1957 Male, age 80, both hemispheres 309.5
2203 Male, age 61, left hemisphere 292.8
2276 Male, age 66, unknown 264.0
2252 Male, age 62, unknown 260.5
Lateral geniculate body
nTPM: 282.4
2106 Female, age 67, right hemisphere 312.4
2575 Female, age 94, right hemisphere 308.5
1953 Male, age 62, unknown 287.7
2399 Male, age 61, left hemisphere 285.1
2035 Female, age 72, unknown 281.8
2841 Male, age 80, both hemispheres 268.9
2857 Male, age 74, right hemisphere 261.3
2659 Male, age 66, unknown 253.6
Lateral thalamic nuclei
nTPM: 274.7
2765 Female, age 67, both hemispheres 306.0
2573 Female, age 94, left hemisphere 284.3
1903 Male, age 76, left hemisphere 283.9
2577 Male, age 74, both hemispheres 250.5
2661 Female, age 72, unknown 248.6
Medial dorsal thalamic nucleus
nTPM: 276.8
2572 Female, age 94, right hemisphere 319.9
1971 Male, age 61, right hemisphere 300.4
1859 Male, age 76, both hemispheres 287.4
2498 Male, age 66, unknown 284.8
2026 Male, age 62, unknown 280.0
2402 Female, age 67, both hemispheres 278.0
1810 Male, age 48, unknown 273.4
2283 Male, age 80, right hemisphere 273.0
2039 Female, age 72, unknown 271.5
1930 Female, age 42, unknown 267.2
2492 Male, age 75, right hemisphere 264.9
2576 Male, age 74, both hemispheres 256.9
2660 Female, age 72, unknown 240.7
Medial geniculate body
nTPM: 266.3
2650 Female, age 94, left hemisphere 283.3
1811 Female, age 42, unknown 280.6
2657 Male, age 74, right hemisphere 276.6
2049 Male, age 76, both hemispheres 266.6
2207 Male, age 80, right hemisphere 257.3
2571 Male, age 75, right hemisphere 252.5
2217 Female, age 72, unknown 247.5
Nucleus reuniens
nTPM: 257.2
2212 Female, age 67, left hemisphere 277.0
2205 Male, age 80, left hemisphere 258.0
2210 Female, age 85, left hemisphere 236.6
Nucleus rhomboideus
nTPM: 250.3
2206 Male, age 80, both hemispheres 280.8
2213 Female, age 67, left hemisphere 247.9
2280 Female, age 85, left hemisphere 222.3
Posterior thalamic nucleus
nTPM: 280.5
2649 Female, age 94, both hemispheres 327.1
2266 Male, age 76, right hemisphere 273.2
2655 Male, age 74, right hemisphere 261.3
2495 Female, age 67, right hemisphere 260.7
Pulvinar
nTPM: 274.5
1932 Male, age 80, right hemisphere 298.0
1972 Male, age 62, unknown 286.6
2398 Male, age 61, left hemisphere 281.7
1929 Male, age 48, unknown 279.4
2496 Female, age 67, right hemisphere 276.3
2499 Male, age 66, unknown 275.4
1899 Female, age 42, unknown 270.1
2214 Male, age 76, right hemisphere 268.2
2724 Male, age 74, right hemisphere 258.6
2582 Female, age 72, unknown 251.2
Subthalamic nucleus
nTPM: 264.3
2124 Male, age 62, unknown 275.7
2282 Male, age 61, both hemispheres 275.2
2275 Male, age 66, unknown 270.3
2406 Female, age 72, unknown 269.3
2056 Female, age 72, unknown 265.8
2779 Female, age 42, unknown 256.6
2658 Male, age 74, both hemispheres 254.2
2216 Male, age 48, unknown 246.9
Ventral posterolateral thalamic nucleus
nTPM: 263.0
2197 Male, age 80, both hemispheres 287.2
2740 Male, age 76, right hemisphere 278.7
2397 Male, age 61, right hemisphere 269.8
2570 Male, age 75, right hemisphere 263.6
2578 Male, age 74, both hemispheres 247.6
2581 Female, age 72, unknown 231.3
Ventral posteromedial thalamic nucleus
nTPM: 272.5
2202 Male, age 61, left hemisphere 295.8
2758 Male, age 80, both hemispheres 276.4
2281 Male, age 75, right hemisphere 272.1
2127 Male, age 76, right hemisphere 263.1
2653 Male, age 74, both hemispheres 255.3
Ventral thalamic nuclei
nTPM: 264.9
1860 Male, age 76, both hemispheres 286.8
1845 Male, age 48, unknown 280.6
1912 Female, age 42, unknown 270.5
2285 Male, age 62, unknown 266.5
2580 Male, age 66, unknown 265.6
2291 Female, age 72, unknown 265.0
2204 Male, age 80, both hemispheres 253.7
2858 Female, age 72, unknown 249.2
2652 Male, age 74, left hemisphere 246.4
Ventromedial nucleus
nTPM: 263.5
1982 Female, age 72, unknown 267.5
1822 Female, age 42, unknown 259.4
Zona incerta
nTPM: 255.1
2215 Male, age 66, unknown 274.9
2822 Male, age 74, right hemisphere 257.4
2403 Male, age 62, unknown 256.6
2208 Male, age 80, right hemisphere 255.8
2663 Female, age 72, unknown 231.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 170.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 170.8
FF:10154-103A1 76 years, female 170.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 340.9
Pig sample Sample description nTPM
Thalamus
nTPM: 340.9
Samples: 4

Max nTPM: 424.0
Min nTPM: 225.0
Sample A Female 404.3
Sample B Female 225.0
Sample C Male 424.0
Sample D Male 310.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 214.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 214.9
Samples: 4

Max nTPM: 228.7
Min nTPM: 198.6
Sample A Male 228.7
Sample B Male 216.1
Sample C Female 216.3
Sample D Female 198.6

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 6.7
68637778 Antisense, RP_050126_01_F01, Mouse strain C57BL/6J (56 days, male) 6.7

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