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CYP46A1
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  • CYP46A1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:45.7 nTPM
HPA:45.7 nTPM
GTEx:53.3 nTPM
FANTOM5:38.4 Scaled Tags Per Million
Pig:74.6 nTPM
Mouse:154.4 nTPM
Allen mouse:24.4 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 45.7
Sample id Sample description nTPM
Amygdala
nTPM: 35.2
2517 Female, age 94, left hemisphere 40.2
2814 Male, age 76, right hemisphere 40.1
1987 Female, age 91, left hemisphere 36.7
2514 Male, age 75, right hemisphere 30.2
2695 Female, age 67, right hemisphere 28.7
Basal amygdala
nTPM: 43.8
2243 Female, age 91, right hemisphere 55.0
2685 Female, age 94, left hemisphere 45.9
2609 Male, age 75, right hemisphere 42.7
2110 Male, age 80, left hemisphere 42.0
1955 Male, age 76, both hemispheres 39.6
2827 Female, age 67, right hemisphere 37.9
Central amygdala
nTPM: 42.1
2826 Female, age 94, left hemisphere 45.0
2239 Male, age 80, left hemisphere 44.9
1905 Male, age 76, both hemispheres 41.9
2701 Female, age 91, right hemisphere 41.6
2515 Male, age 75, right hemisphere 37.2
Corticomedial amygdala
nTPM: 43.3
2242 Female, age 91, right hemisphere 54.5
2829 Male, age 80, left hemisphere 47.2
2535 Female, age 67, right hemisphere 47.1
2429 Female, age 94, left hemisphere 39.0
2240 Male, age 76, both hemispheres 38.7
2428 Male, age 75, right hemisphere 33.1
Lateral amygdala
nTPM: 39.3
2534 Female, age 94, left hemisphere 49.9
2255 Female, age 91, right hemisphere 43.8
2256 Male, age 80, left hemisphere 39.9
1883 Male, age 76, both hemispheres 37.1
2516 Male, age 75, right hemisphere 36.2
2830 Female, age 67, right hemisphere 28.7
Stria terminalis, bed nucleus
nTPM: 45.7
2486 Female, age 94, both hemispheres 54.6
1974 Female, age 91, both hemispheres 46.8
2201 Male, age 74, unknown 35.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 53.3
Samples: 152

Max nTPM: 101.4
Min nTPM: 1.2
Std nTPM: 18.5
Median nTPM: 53.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 101.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 98.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 96.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 94.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 90.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 85.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 85.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 84.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 83.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 83.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 82.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 81.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 80.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 80.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 78.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 78.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 78.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 77.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 77.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 77.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 73.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 73.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 73.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 72.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 72.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 72.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 71.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 71.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 70.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 70.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 70.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 69.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 68.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 68.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 67.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 67.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 66.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 65.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 64.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 64.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 64.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 64.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 64.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 62.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 60.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 60.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 60.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 59.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 59.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 59.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 59.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 59.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 59.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 59.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 59.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 58.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 58.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 58.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 58.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 58.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 57.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 57.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 57.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 57.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 57.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 57.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 56.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 55.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 55.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 55.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 55.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 55.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 54.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 53.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 53.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 52.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 52.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 51.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 51.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 51.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 50.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 50.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 50.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 50.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 50.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 49.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 49.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 49.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 48.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 47.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 47.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 45.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 45.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 44.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 43.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 43.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 43.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 43.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 43.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 42.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 42.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 42.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 42.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 42.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 41.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 41.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 41.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 40.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 40.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 40.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 40.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 39.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 39.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 39.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 39.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 39.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 38.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 38.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 38.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 38.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 37.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 36.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 36.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 36.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 35.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 35.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 33.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 33.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 33.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 32.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 32.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 31.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 31.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 30.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 29.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 28.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 28.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 28.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 28.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 27.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 27.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 27.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 26.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 25.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 24.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 22.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 19.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 18.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 15.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 38.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 38.4
FF:10151-102I7 76 years, female 38.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 74.6
Pig sample Sample description nTPM
Amygdala
nTPM: 74.6
Samples: 4

Max nTPM: 108.9
Min nTPM: 47.8
Sample A Female 108.9
Sample B Female 47.8
Sample C Male 60.5
Sample D Male 81.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 154.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 154.4
Samples: 4

Max nTPM: 160.7
Min nTPM: 150.1
Sample A Male 153.8
Sample B Male 150.1
Sample C Female 160.7
Sample D Female 152.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.4
532667 Antisense, RP_040825_01_C02, Mouse strain C57BL/6J (56 days, male) 27.3
70613977 Antisense, RP_050725_01_C08, Mouse strain C57BL/6J (56 days, male) 21.6

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