BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:96.2 nTPM
HPA:96.2 nTPM
GTEx:171.0 nTPM
FANTOM5:116.4 Scaled Tags Per Million
Pig:165.8 nTPM
Mouse:158.7 nTPM
Allen mouse:24.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 96.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 96.2
2290 Female, age 72, unknown 132.2
1857 Female, age 85, left hemisphere 110.2
2289 Male, age 61, right hemisphere 102.8
2846 Female, age 79, unknown 102.0
1854 Male, age 80, left hemisphere 91.5
1781 Male, age 74, unknown 86.0
2288 Male, age 75, left hemisphere 81.7
2481 Female, age 94, left hemisphere 63.0
Claustrum
nTPM: 44.9
2568 Male, age 61, both hemispheres 56.2
2198 Male, age 80, both hemispheres 52.3
2284 Female, age 91, both hemispheres 52.0
2196 Female, age 79, unknown 51.3
2645 Female, age 72, unknown 45.2
2491 Male, age 75, both hemispheres 41.9
1956 Male, age 74, unknown 37.5
2392 Female, age 94, both hemispheres 35.5
2292 Female, age 85, both hemispheres 32.2
Globus pallidus, externus
nTPM: 28.4
2646 Male, age 61, right hemisphere 41.7
2395 Male, age 75, both hemispheres 29.1
2567 Female, age 72, unknown 25.3
2772 Female, age 79, unknown 23.9
1996 Male, age 80, right hemisphere 22.0
Globus pallidus, internus
nTPM: 25.9
2483 Female, age 94, right hemisphere 46.7
1818 Male, age 74, unknown 27.4
2287 Male, age 75, right hemisphere 24.9
2566 Female, age 72, unknown 23.6
2037 Male, age 80, right hemisphere 22.5
2778 Female, age 91, both hemispheres 18.9
2111 Female, age 85, right hemisphere 17.3
Nucleus accumbens
nTPM: 79.1
1783 Male, age 74, unknown 109.7
1806 Female, age 85, left hemisphere 105.4
2824 Male, age 61, right hemisphere 96.8
1856 Female, age 91, right hemisphere 86.8
2698 Female, age 72, unknown 78.2
2286 Male, age 75, left hemisphere 76.0
2391 Female, age 94, left hemisphere 44.3
2732 Male, age 80, right hemisphere 35.3
Nucleus basalis of Meynert
nTPM: 65.5
2484 Female, age 94, left hemisphere 85.0
2393 Male, age 80, right hemisphere 72.2
2821 Male, age 75, both hemispheres 52.7
2569 Male, age 61, both hemispheres 52.0
Nucleus of the diagonal band
nTPM: 55.2
2029 Male, age 61, right hemisphere 59.9
2775 Male, age 80, right hemisphere 58.5
2195 Female, age 85, both hemispheres 58.2
1812 Female, age 91, both hemispheres 57.9
1979 Male, age 74, unknown 41.4
Olfactory tubercle
nTPM: 49.6
2487 Female, age 94, left hemisphere 51.8
1998 Female, age 91, both hemispheres 49.9
1846 Male, age 80, right hemisphere 48.5
2856 Male, age 75, right hemisphere 48.0
Putamen
nTPM: 95.8
2489 Female, age 72, unknown 115.1
1829 Male, age 74, unknown 110.3
1838 Male, age 80, right hemisphere 108.7
2466 Female, age 79, unknown 105.3
2647 Male, age 75, left hemisphere 86.7
1937 Female, age 91, right hemisphere 81.7
2482 Female, age 94, left hemisphere 62.8
Septal nuclei
nTPM: 47.1
1960 Male, age 74, unknown 68.3
2031 Female, age 72, unknown 51.2
2059 Female, age 85, both hemispheres 48.8
2629 Female, age 94, right hemisphere 48.1
2009 Female, age 91, both hemispheres 45.1
2394 Male, age 61, left hemisphere 37.0
2199 Male, age 80, right hemisphere 31.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 171.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 171.0
Samples: 246

Max nTPM: 381.9
Min nTPM: 20.8
Std nTPM: 71.0
Median nTPM: 164.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 381.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 377.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 362.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 359.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 346.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 325.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 316.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 313.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 297.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 295.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 295.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 154.7
Samples: 246

Max nTPM: 331.4
Min nTPM: 14.3
Std nTPM: 64.1
Median nTPM: 158.2
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 331.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 325.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 323.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 305.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 303.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 297.1
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 286.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 282.6
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 274.1
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 265.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 259.0
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Brain - Putamen (basal ganglia)
Average nTPM: 170.5
Samples: 205

Max nTPM: 343.9
Min nTPM: 36.7
Std nTPM: 71.2
Median nTPM: 169.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 343.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 336.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 333.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 313.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 308.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 307.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 304.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 297.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 297.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 291.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 285.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.2
FF:10164-103B2 76 years, female 71.2
Globus pallidus
Scaled Tags Per Million: 33.3
FF:10175-103C4 60 years, female 47.3
FF:10161-103A8 76 years, female 19.3
Nucleus accumbens
Scaled Tags Per Million: 91.4
FF:10037-101F1 23-56 years, mixed 91.4
Putamen
Scaled Tags Per Million: 116.4
FF:10176-103C5 60 years, female 116.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 165.8
Pig sample Sample description nTPM
Caudate
nTPM: 165.7
Samples: 4

Max nTPM: 207.9
Min nTPM: 117.2
Sample A Female 117.2
Sample B Female 177.5
Sample C Male 207.9
Sample D Male 160.3
Putamen
nTPM: 140.2
Samples: 4

Max nTPM: 197.7
Min nTPM: 60.0
Sample A Female 60.0
Sample B Female 134.5
Sample C Male 197.7
Sample D Male 168.6
Septum
nTPM: 82.7
Samples: 4

Max nTPM: 101.9
Min nTPM: 44.5
Sample A Female 101.9
Sample B Female 100.0
Sample C Male 44.5
Sample D Male 84.2
Ventral pallidum
nTPM: 104.5
Samples: 4

Max nTPM: 128.1
Min nTPM: 72.0
Sample A Female 128.1
Sample B Female 110.1
Sample C Male 72.0
Sample D Male 107.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 158.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 158.7
Samples: 4

Max nTPM: 183.1
Min nTPM: 133.9
Sample A Male 166.5
Sample B Male 183.1
Sample C Female 133.9
Sample D Female 151.2
Septum
nTPM: 82.7
Samples: 4

Max nTPM: 85.9
Min nTPM: 78.5
Sample A Male 85.9
Sample B Male 84.9
Sample C Female 81.3
Sample D Female 78.5
Ventral forebrain
nTPM: 133.6
Samples: 4

Max nTPM: 143.6
Min nTPM: 118.8
Sample A Male 143.6
Sample B Male 118.8
Sample C Female 138.6
Sample D Female 133.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 24.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 24.4
532667 Antisense, RP_040825_01_C02, Mouse strain C57BL/6J (56 days, male) 26.8
70613977 Antisense, RP_050725_01_C08, Mouse strain C57BL/6J (56 days, male) 22.1
Pallidum
Expression energy: 14.9
532667 Antisense, RP_040825_01_C02, Mouse strain C57BL/6J (56 days, male) 16.7
70613977 Antisense, RP_050725_01_C08, Mouse strain C57BL/6J (56 days, male) 13.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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