BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:44.2 nTPM
HPA:44.2 nTPM
GTEx:48.1 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:4.9 nTPM
Mouse:4.0 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018843Antibody HPA019080Antibody HPA019092
Glial cells LowNot detectedLow
Neuronal cells MediumNot detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.0
2846 Female, age 79, unknown 44.4
2481 Female, age 94, left hemisphere 43.2
1857 Female, age 85, left hemisphere 42.0
1854 Male, age 80, left hemisphere 39.5
1781 Male, age 74, unknown 39.0
2289 Male, age 61, right hemisphere 38.5
2290 Female, age 72, unknown 38.0
2288 Male, age 75, left hemisphere 35.5
Claustrum
nTPM: 37.6
2292 Female, age 85, both hemispheres 41.9
2198 Male, age 80, both hemispheres 39.5
2196 Female, age 79, unknown 37.2
2491 Male, age 75, both hemispheres 37.2
1956 Male, age 74, unknown 37.1
2284 Female, age 91, both hemispheres 37.0
2392 Female, age 94, both hemispheres 37.0
2645 Female, age 72, unknown 37.0
2568 Male, age 61, both hemispheres 34.4
Globus pallidus, externus
nTPM: 44.2
2395 Male, age 75, both hemispheres 53.1
1996 Male, age 80, right hemisphere 44.6
2772 Female, age 79, unknown 43.6
2567 Female, age 72, unknown 40.1
2646 Male, age 61, right hemisphere 39.5
Globus pallidus, internus
nTPM: 42.0
2037 Male, age 80, right hemisphere 45.0
2483 Female, age 94, right hemisphere 43.9
1818 Male, age 74, unknown 43.3
2566 Female, age 72, unknown 42.5
2111 Female, age 85, right hemisphere 41.6
2778 Female, age 91, both hemispheres 40.8
2287 Male, age 75, right hemisphere 36.6
Nucleus accumbens
nTPM: 39.0
2732 Male, age 80, right hemisphere 43.1
2698 Female, age 72, unknown 42.2
1806 Female, age 85, left hemisphere 40.2
1783 Male, age 74, unknown 38.8
1856 Female, age 91, right hemisphere 38.2
2391 Female, age 94, left hemisphere 37.3
2286 Male, age 75, left hemisphere 37.2
2824 Male, age 61, right hemisphere 34.7
Nucleus basalis of Meynert
nTPM: 39.5
2569 Male, age 61, both hemispheres 42.5
2393 Male, age 80, right hemisphere 39.3
2821 Male, age 75, both hemispheres 39.2
2484 Female, age 94, left hemisphere 37.1
Nucleus of the diagonal band
nTPM: 38.5
1812 Female, age 91, both hemispheres 44.2
1979 Male, age 74, unknown 39.6
2775 Male, age 80, right hemisphere 37.3
2029 Male, age 61, right hemisphere 35.9
2195 Female, age 85, both hemispheres 35.7
Olfactory tubercle
nTPM: 38.6
1846 Male, age 80, right hemisphere 39.9
2487 Female, age 94, left hemisphere 39.9
1998 Female, age 91, both hemispheres 37.3
2856 Male, age 75, right hemisphere 37.3
Putamen
nTPM: 39.0
2482 Female, age 94, left hemisphere 42.7
2489 Female, age 72, unknown 40.6
1937 Female, age 91, right hemisphere 39.4
2466 Female, age 79, unknown 39.1
1829 Male, age 74, unknown 37.3
1838 Male, age 80, right hemisphere 37.1
2647 Male, age 75, left hemisphere 36.5
Septal nuclei
nTPM: 40.3
2009 Female, age 91, both hemispheres 42.6
2199 Male, age 80, right hemisphere 42.5
2629 Female, age 94, right hemisphere 40.3
2059 Female, age 85, both hemispheres 40.0
2031 Female, age 72, unknown 39.2
1960 Male, age 74, unknown 39.1
2394 Male, age 61, left hemisphere 38.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.4
Samples: 246

Max nTPM: 162.4
Min nTPM: 6.2
Std nTPM: 23.8
Median nTPM: 37.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 162.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 136.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 131.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 131.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 120.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 107.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 104.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 104.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 93.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 92.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 88.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.1
Samples: 246

Max nTPM: 262.5
Min nTPM: 10.2
Std nTPM: 31.3
Median nTPM: 41.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 262.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 224.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 164.9
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 154.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 146.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 127.6
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 125.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 125.2
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 120.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 115.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 112.6
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Brain - Putamen (basal ganglia)
Average nTPM: 45.1
Samples: 205

Max nTPM: 149.0
Min nTPM: 12.1
Std nTPM: 22.2
Median nTPM: 39.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 149.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 128.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 120.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 120.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 108.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 107.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 106.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 96.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 95.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 91.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 89.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.1
FF:10164-103B2 76 years, female 7.1
Globus pallidus
Scaled Tags Per Million: 9.8
FF:10161-103A8 76 years, female 12.6
FF:10175-103C4 60 years, female 7.1
Nucleus accumbens
Scaled Tags Per Million: 5.6
FF:10037-101F1 23-56 years, mixed 5.6
Putamen
Scaled Tags Per Million: 3.7
FF:10176-103C5 60 years, female 3.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.9
Pig sample Sample description nTPM
Caudate
nTPM: 4.9
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.6
Sample A Female 4.9
Sample B Female 5.4
Sample C Male 4.6
Sample D Male 4.7
Putamen
nTPM: 4.1
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.7
Sample A Female 4.1
Sample B Female 4.5
Sample C Male 3.7
Sample D Male 4.0
Septum
nTPM: 4.5
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.0
Sample A Female 4.5
Sample B Female 4.8
Sample C Male 4.7
Sample D Male 4.0
Ventral pallidum
nTPM: 4.3
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.8
Sample A Female 4.3
Sample B Female 4.9
Sample C Male 3.8
Sample D Male 4.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.6
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.9
Sample A Male 2.0
Sample B Male 3.5
Sample C Female 2.8
Sample D Female 1.9
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 5.1
Min nTPM: 2.8
Sample A Male 3.5
Sample B Male 5.1
Sample C Female 4.0
Sample D Female 2.8
Ventral forebrain
nTPM: 4.0
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.2
Sample A Male 3.2
Sample B Male 4.2
Sample C Female 4.7
Sample D Female 3.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
67978490 Antisense, RP_040923_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
67978490 Antisense, RP_040923_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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