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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:79.8 nTPM
HPA:65.5 nTPM
GTEx:79.8 nTPM
FANTOM5:90.4 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 65.5
overview
Male, age 65
Small intestine sample 232
nTPM: 60.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 70
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 66.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 64.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 79.8
Samples: 187

Max nTPM: 183.5
Min nTPM: 32.1
Std nTPM: 24.2
Median nTPM: 76.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 183.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 173.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 150.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 133.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 133.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 131.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 129.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 126.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 126.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 124.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 123.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 123.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 122.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 120.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 119.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 114.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 113.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 111.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 108.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 108.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 107.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 106.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 106.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 105.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 105.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 105.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 105.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 104.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 103.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 102.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 102.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 102.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 101.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 100.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 98.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 97.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 97.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 96.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 95.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 94.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 94.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 94.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 94.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 94.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 94.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 93.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 93.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 92.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 91.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 91.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 90.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 90.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 89.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 89.7
GTEX-1192X-2526-SM-59868 50-59 years, male 89.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 88.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 88.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 88.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 88.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 88.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 87.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 87.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 86.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 86.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 86.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 85.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 84.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 84.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 84.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 83.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 82.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 82.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 81.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 81.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 80.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 80.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 80.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 80.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 80.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 79.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 79.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 79.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 79.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 78.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 78.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 78.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 78.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 77.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 77.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 76.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 76.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 76.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 76.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 76.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 75.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 75.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 75.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 75.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 74.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 74.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 74.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 74.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 74.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 73.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 73.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 72.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 72.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 72.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 71.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 71.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 71.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 70.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 70.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 70.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 70.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 70.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 69.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 69.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 69.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 68.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 68.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 68.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 68.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 67.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 67.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 67.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 67.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 67.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 67.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 66.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 66.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 66.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 66.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 65.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 64.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 64.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 64.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 62.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 62.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 62.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 62.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 62.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 62.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 62.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 61.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 61.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 61.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 61.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 61.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 61.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 60.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 60.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 60.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 60.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 60.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 60.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 59.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 58.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 58.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 57.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 57.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 57.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 55.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 55.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 54.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 54.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 54.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 53.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 53.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 52.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 52.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 50.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 49.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 49.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 49.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 48.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 47.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 46.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 45.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 44.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 44.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 44.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 40.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 40.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 37.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 32.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 32.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 90.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 90.4
FF:10024-101D6 15,40,85 years, mixed 90.4

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