We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GPM6B
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • GPM6B
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:419.9 nTPM
HPA:419.9 nTPM
FANTOM5:1381.5 Scaled Tags Per Million
Pig:449.5 nTPM
Mouse:497.2 nTPM
Allen mouse:7.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 419.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 362.9
2032 Female, age 42, unknown 373.6
2396 Male, age 61, right hemisphere 368.9
2497 Male, age 66, unknown 346.4
Centromedial thalamic nucleus
nTPM: 369.6
2279 Female, age 85, left hemisphere 373.2
2401 Male, age 76, right hemisphere 366.0
Habenula
nTPM: 333.4
2252 Male, age 62, unknown 356.9
2203 Male, age 61, left hemisphere 335.2
1957 Male, age 80, both hemispheres 326.7
2276 Male, age 66, unknown 314.6
Lateral geniculate body
nTPM: 412.9
2575 Female, age 94, right hemisphere 549.9
2841 Male, age 80, both hemispheres 493.9
2106 Female, age 67, right hemisphere 402.4
2399 Male, age 61, left hemisphere 384.6
2035 Female, age 72, unknown 382.0
2857 Male, age 74, right hemisphere 374.3
2659 Male, age 66, unknown 358.1
1953 Male, age 62, unknown 358.0
Lateral thalamic nuclei
nTPM: 396.6
2765 Female, age 67, both hemispheres 509.0
2573 Female, age 94, left hemisphere 475.5
2661 Female, age 72, unknown 371.4
2577 Male, age 74, both hemispheres 333.9
1903 Male, age 76, left hemisphere 293.3
Medial dorsal thalamic nucleus
nTPM: 355.5
2572 Female, age 94, right hemisphere 510.2
2402 Female, age 67, both hemispheres 380.0
2492 Male, age 75, right hemisphere 368.3
2660 Female, age 72, unknown 364.1
2576 Male, age 74, both hemispheres 347.8
1859 Male, age 76, both hemispheres 343.7
1971 Male, age 61, right hemisphere 340.6
2498 Male, age 66, unknown 337.4
2039 Female, age 72, unknown 332.7
1810 Male, age 48, unknown 331.9
2026 Male, age 62, unknown 329.9
1930 Female, age 42, unknown 326.4
2283 Male, age 80, right hemisphere 308.2
Medial geniculate body
nTPM: 363.6
2650 Female, age 94, left hemisphere 443.7
2217 Female, age 72, unknown 392.4
2657 Male, age 74, right hemisphere 384.4
2571 Male, age 75, right hemisphere 362.7
2207 Male, age 80, right hemisphere 346.6
2049 Male, age 76, both hemispheres 344.2
1811 Female, age 42, unknown 271.2
Nucleus reuniens
nTPM: 404.6
2210 Female, age 85, left hemisphere 447.2
2205 Male, age 80, left hemisphere 427.4
2212 Female, age 67, left hemisphere 339.3
Nucleus rhomboideus
nTPM: 352.1
2280 Female, age 85, left hemisphere 378.5
2213 Female, age 67, left hemisphere 364.9
2206 Male, age 80, both hemispheres 313.1
Posterior thalamic nucleus
nTPM: 372.9
2649 Female, age 94, both hemispheres 500.5
2655 Male, age 74, right hemisphere 343.0
2495 Female, age 67, right hemisphere 329.1
2266 Male, age 76, right hemisphere 319.2
Pulvinar
nTPM: 368.5
1932 Male, age 80, right hemisphere 422.8
2398 Male, age 61, left hemisphere 416.7
2499 Male, age 66, unknown 394.8
2724 Male, age 74, right hemisphere 379.2
1899 Female, age 42, unknown 370.3
1972 Male, age 62, unknown 367.6
1929 Male, age 48, unknown 338.0
2214 Male, age 76, right hemisphere 337.8
2496 Female, age 67, right hemisphere 335.9
2582 Female, age 72, unknown 322.1
Subthalamic nucleus
nTPM: 419.9
2056 Female, age 72, unknown 499.4
2282 Male, age 61, both hemispheres 489.7
2124 Male, age 62, unknown 470.6
2216 Male, age 48, unknown 456.1
2275 Male, age 66, unknown 427.2
2779 Female, age 42, unknown 387.3
2658 Male, age 74, both hemispheres 348.8
2406 Female, age 72, unknown 280.0
Ventral posterolateral thalamic nucleus
nTPM: 366.2
2570 Male, age 75, right hemisphere 418.9
2740 Male, age 76, right hemisphere 402.4
2197 Male, age 80, both hemispheres 364.6
2397 Male, age 61, right hemisphere 353.6
2581 Female, age 72, unknown 336.5
2578 Male, age 74, both hemispheres 321.3
Ventral posteromedial thalamic nucleus
nTPM: 372.8
2281 Male, age 75, right hemisphere 458.3
2127 Male, age 76, right hemisphere 403.8
2758 Male, age 80, both hemispheres 338.6
2202 Male, age 61, left hemisphere 338.5
2653 Male, age 74, both hemispheres 324.8
Ventral thalamic nuclei
nTPM: 383.8
2291 Female, age 72, unknown 439.8
2858 Female, age 72, unknown 399.5
1845 Male, age 48, unknown 398.7
2580 Male, age 66, unknown 398.3
1860 Male, age 76, both hemispheres 380.0
2204 Male, age 80, both hemispheres 379.1
2652 Male, age 74, left hemisphere 376.3
2285 Male, age 62, unknown 354.6
1912 Female, age 42, unknown 327.6
Ventromedial nucleus
nTPM: 272.2
1982 Female, age 72, unknown 277.7
1822 Female, age 42, unknown 266.6
Zona incerta
nTPM: 367.5
2215 Male, age 66, unknown 438.3
2822 Male, age 74, right hemisphere 378.9
2403 Male, age 62, unknown 371.8
2663 Female, age 72, unknown 328.4
2208 Male, age 80, right hemisphere 320.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1381.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1381.5
FF:10154-103A1 76 years, female 1381.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 449.5
Pig sample Sample description nTPM
Thalamus
nTPM: 449.5
Samples: 4

Max nTPM: 680.0
Min nTPM: 334.6
Sample A Female 347.0
Sample B Female 334.6
Sample C Male 436.5
Sample D Male 680.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 497.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 497.2
Samples: 4

Max nTPM: 552.7
Min nTPM: 469.1
Sample A Male 488.7
Sample B Male 478.2
Sample C Female 552.7
Sample D Female 469.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 7.7
544520 Antisense, RP_040324_01_G06, Mouse strain C57BL/6J (56 days, male) 8.3
74357593 Antisense, RP_060117_01_A08, Mouse strain C57BL/6J (56 days, male) 7.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.