BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:14.9 nTPM
HPA:14.9 nTPM
GTEx:24.1 nTPM
FANTOM5:14.2 Scaled Tags Per Million
Pig:10.9 nTPM
Mouse:17.0 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA000918
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.1
1781 Male, age 74, unknown 14.6
2289 Male, age 61, right hemisphere 14.0
2288 Male, age 75, left hemisphere 13.2
1857 Female, age 85, left hemisphere 13.1
2846 Female, age 79, unknown 13.1
2481 Female, age 94, left hemisphere 12.8
1854 Male, age 80, left hemisphere 12.3
2290 Female, age 72, unknown 11.5
Claustrum
nTPM: 14.9
2568 Male, age 61, both hemispheres 17.4
2198 Male, age 80, both hemispheres 16.0
2491 Male, age 75, both hemispheres 15.4
1956 Male, age 74, unknown 14.9
2645 Female, age 72, unknown 14.9
2284 Female, age 91, both hemispheres 14.3
2292 Female, age 85, both hemispheres 14.3
2196 Female, age 79, unknown 13.8
2392 Female, age 94, both hemispheres 13.0
Globus pallidus, externus
nTPM: 14.2
2567 Female, age 72, unknown 18.0
2772 Female, age 79, unknown 14.7
2646 Male, age 61, right hemisphere 14.0
1996 Male, age 80, right hemisphere 13.6
2395 Male, age 75, both hemispheres 10.7
Globus pallidus, internus
nTPM: 12.9
2778 Female, age 91, both hemispheres 15.5
2566 Female, age 72, unknown 14.9
2037 Male, age 80, right hemisphere 13.1
2287 Male, age 75, right hemisphere 12.7
1818 Male, age 74, unknown 11.9
2483 Female, age 94, right hemisphere 11.8
2111 Female, age 85, right hemisphere 10.7
Nucleus accumbens
nTPM: 14.0
1806 Female, age 85, left hemisphere 16.2
2824 Male, age 61, right hemisphere 15.4
1856 Female, age 91, right hemisphere 15.1
1783 Male, age 74, unknown 14.7
2732 Male, age 80, right hemisphere 13.7
2698 Female, age 72, unknown 12.8
2286 Male, age 75, left hemisphere 12.4
2391 Female, age 94, left hemisphere 11.8
Nucleus basalis of Meynert
nTPM: 12.8
2569 Male, age 61, both hemispheres 13.9
2484 Female, age 94, left hemisphere 12.9
2821 Male, age 75, both hemispheres 12.3
2393 Male, age 80, right hemisphere 12.2
Nucleus of the diagonal band
nTPM: 14.6
2029 Male, age 61, right hemisphere 16.0
2775 Male, age 80, right hemisphere 15.6
1812 Female, age 91, both hemispheres 14.1
1979 Male, age 74, unknown 14.0
2195 Female, age 85, both hemispheres 13.4
Olfactory tubercle
nTPM: 14.4
2487 Female, age 94, left hemisphere 16.5
1998 Female, age 91, both hemispheres 15.8
1846 Male, age 80, right hemisphere 12.8
2856 Male, age 75, right hemisphere 12.7
Putamen
nTPM: 13.9
1937 Female, age 91, right hemisphere 15.4
1838 Male, age 80, right hemisphere 14.6
2466 Female, age 79, unknown 14.5
2647 Male, age 75, left hemisphere 14.3
2489 Female, age 72, unknown 13.6
1829 Male, age 74, unknown 12.8
2482 Female, age 94, left hemisphere 11.9
Septal nuclei
nTPM: 13.8
1960 Male, age 74, unknown 15.4
2031 Female, age 72, unknown 14.7
2009 Female, age 91, both hemispheres 14.5
2059 Female, age 85, both hemispheres 13.9
2629 Female, age 94, right hemisphere 13.2
2199 Male, age 80, right hemisphere 12.5
2394 Male, age 61, left hemisphere 12.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.2
Samples: 246

Max nTPM: 44.6
Min nTPM: 8.1
Std nTPM: 6.1
Median nTPM: 18.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 44.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 41.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 34.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 32.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 31.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 31.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 30.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 29.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 29.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 29.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 29.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.1
Samples: 246

Max nTPM: 39.0
Min nTPM: 6.6
Std nTPM: 6.8
Median nTPM: 25.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 39.0
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 38.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 38.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 37.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 37.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 36.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 36.4
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 35.9
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 35.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 35.0
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 34.9
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Brain - Putamen (basal ganglia)
Average nTPM: 19.7
Samples: 205

Max nTPM: 36.6
Min nTPM: 7.3
Std nTPM: 6.1
Median nTPM: 19.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 36.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 33.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 33.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 32.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 32.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 32.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 31.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 31.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 29.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 29.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 29.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.6
FF:10164-103B2 76 years, female 9.6
Globus pallidus
Scaled Tags Per Million: 8.0
FF:10161-103A8 76 years, female 9.7
FF:10175-103C4 60 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 14.2
FF:10037-101F1 23-56 years, mixed 14.2
Putamen
Scaled Tags Per Million: 13.2
FF:10176-103C5 60 years, female 13.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.9
Pig sample Sample description nTPM
Caudate
nTPM: 10.9
Samples: 4

Max nTPM: 13.4
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 10.2
Sample C Male 13.4
Sample D Male 11.3
Putamen
nTPM: 10.2
Samples: 4

Max nTPM: 13.8
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 8.7
Sample C Male 13.8
Sample D Male 11.4
Septum
nTPM: 9.3
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.6
Sample A Female 9.3
Sample B Female 8.7
Sample C Male 11.7
Sample D Male 7.6
Ventral pallidum
nTPM: 9.6
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.2
Sample A Female 8.2
Sample B Female 9.4
Sample C Male 11.6
Sample D Male 9.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.8
Sample A Male 14.5
Sample B Male 15.5
Sample C Female 10.8
Sample D Female 13.3
Septum
nTPM: 17.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 14.6
Sample A Male 20.4
Sample B Male 16.6
Sample C Female 16.3
Sample D Female 14.6
Ventral forebrain
nTPM: 14.9
Samples: 4

Max nTPM: 18.3
Min nTPM: 12.0
Sample A Male 18.3
Sample B Male 12.8
Sample C Female 16.5
Sample D Female 12.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69817229 Antisense, RP_050510_02_H08, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
69817229 Antisense, RP_050510_02_H08, Mouse strain C57BL/6J (56 days, male) 0.1

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