MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:72.7 nTPM
HPA:72.7 nTPM
GTEx:67.6 nTPM
FANTOM5:194.2 Scaled Tags Per Million
Pig:133.1 nTPM
Mouse:274.5 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.9
2411 Female, age 72, unknown 71.1
1870 Female, age 42, unknown 68.8
2019 Male, age 18, unknown 65.0
1833 Male, age 53, unknown 64.8
1827 Male, age 72, unknown 62.8
2219 Male, age 76, both hemispheres 62.7
1830 Male, age 51, unknown 62.1
2828 Female, age 72, unknown 59.2
2666 Male, age 74, left hemisphere 54.8
2586 Male, age 75, left hemisphere 47.8
Dorsal raphe nucleus
nTPM: 65.4
2750 Male, age 76, both hemispheres 74.4
2298 Female, age 72, unknown 67.9
2047 Male, age 72, unknown 62.6
1828 Male, age 53, unknown 61.9
2016 Female, age 72, unknown 60.1
Inferior colliculus
nTPM: 61.8
2097 Female, age 72, unknown 67.0
1848 Female, age 42, unknown 62.2
1890 Male, age 53, unknown 59.8
2849 Male, age 72, unknown 58.3
Median raphe nucleus
nTPM: 68.4
2220 Male, age 76, midline 68.4
Pedunculopontine tegmental nucleus
nTPM: 72.7
2338 Male, age 61, both hemispheres 78.2
2334 Male, age 80, both hemispheres 72.6
1921 Female, age 85, both hemispheres 67.4
Periaquaductal grey, anterior
nTPM: 61.5
2502 Female, age 75, unknown 64.4
1947 Male, age 18, unknown 63.0
1795 Male, age 51, unknown 57.0
Periaquaductal grey, dorsal
nTPM: 58.1
2464 Female, age 72, unknown 58.8
2850 Male, age 76, both hemispheres 58.4
1840 Male, age 53, unknown 58.1
1831 Male, age 72, unknown 57.0
Periaquaductal grey, lateral
nTPM: 59.2
2272 Male, age 74, both hemispheres 63.4
2053 Male, age 18, unknown 59.0
2140 Male, age 76, both hemispheres 55.3
Pretectal area
nTPM: 62.2
1816 Male, age 51, unknown 65.1
1817 Female, age 42, unknown 65.1
1815 Male, age 53, unknown 65.0
2273 Male, age 74, both hemispheres 64.4
1944 Female, age 72, unknown 62.8
2224 Female, age 72, unknown 62.6
2007 Male, age 72, unknown 62.0
2667 Female, age 75, unknown 61.0
2825 Male, age 18, unknown 60.2
2316 Male, age 76, right hemisphere 58.0
2407 Male, age 75, both hemispheres 57.6
Red nucleus
nTPM: 65.9
1821 Female, age 72, unknown 75.6
1865 Male, age 51, unknown 69.5
2725 Female, age 75, unknown 69.1
1954 Female, age 42, unknown 68.0
1904 Male, age 53, unknown 67.9
2503 Female, age 72, unknown 66.4
2823 Male, age 76, right hemisphere 65.9
2227 Male, age 72, unknown 65.5
2769 Male, age 72, unknown 64.8
2785 Male, age 18, unknown 62.8
2588 Male, age 74, left hemisphere 59.3
2584 Male, age 75, left hemisphere 56.5
Substantia nigra
nTPM: 66.9
2241 Male, age 72, unknown 77.9
1916 Female, age 42, unknown 74.6
1851 Male, age 51, unknown 71.0
1941 Male, age 53, unknown 68.5
2409 Female, age 72, unknown 67.6
1889 Female, age 72, unknown 67.5
2699 Male, age 18, unknown 65.6
2590 Female, age 75, unknown 62.7
2665 Male, age 74, both hemispheres 59.1
2583 Male, age 75, right hemisphere 54.9
Superior colliculus
nTPM: 61.5
2587 Male, age 74, left hemisphere 72.4
1895 Male, age 76, right hemisphere 65.7
1913 Female, age 42, unknown 64.8
2261 Male, age 18, unknown 61.5
1839 Male, age 51, unknown 60.9
2087 Female, age 72, unknown 60.2
1796 Male, age 53, unknown 59.8
2668 Female, age 75, unknown 59.7
1995 Male, age 72, unknown 58.9
2664 Male, age 75, both hemispheres 50.9
Ventral tegmental area
nTPM: 66.9
2218 Male, age 76, both hemispheres 71.6
2410 Female, age 72, unknown 71.4
2223 Female, age 72, unknown 68.3
1915 Female, age 42, unknown 67.0
2021 Male, age 53, unknown 62.8
1942 Male, age 51, unknown 60.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.6
Samples: 139

Max nTPM: 115.5
Min nTPM: 43.9
Std nTPM: 13.0
Median nTPM: 65.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 115.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 113.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 103.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 100.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 98.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 93.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 91.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 90.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 89.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 89.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 86.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 194.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 194.2
FF:10158-103A5 76 years, female 194.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 133.1
Pig sample Sample description nTPM
Midbrain
nTPM: 133.1
Samples: 4

Max nTPM: 177.2
Min nTPM: 101.6
Sample A Female 177.2
Sample B Female 101.6
Sample C Male 141.6
Sample D Male 111.9
Periaqueductal gray
nTPM: 97.6
Samples: 3

Max nTPM: 106.6
Min nTPM: 89.6
Sample B Female 96.6
Sample C Male 106.6
Sample D Male 89.6
Substantia nigra
nTPM: 122.2
Samples: 4

Max nTPM: 151.4
Min nTPM: 93.3
Sample A Female 151.4
Sample B Female 93.3
Sample C Male 130.7
Sample D Male 113.4
Superior colliculi
nTPM: 128.8
Samples: 4

Max nTPM: 149.9
Min nTPM: 94.7
Sample A Female 142.4
Sample B Female 94.7
Sample C Male 149.9
Sample D Male 128.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 274.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 274.5
Samples: 4

Max nTPM: 282.4
Min nTPM: 269.2
Sample A Male 269.2
Sample B Male 282.4
Sample C Female 272.9
Sample D Female 273.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
491 Antisense, RP_Baylor_102814, Mouse strain C57BL/6J (56 days, male) 4.3
492 Antisense, RP_Baylor_102814, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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