BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:105.5 nTPM
HPA:105.5 nTPM
GTEx:109.2 nTPM
FANTOM5:125.3 Scaled Tags Per Million
Pig:71.3 nTPM
Mouse:94.0 nTPM
Allen mouse:1.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA016936
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 105.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 87.8
2288 Male, age 75, left hemisphere 94.7
1781 Male, age 74, unknown 92.8
1857 Female, age 85, left hemisphere 88.5
2846 Female, age 79, unknown 87.5
2290 Female, age 72, unknown 87.4
1854 Male, age 80, left hemisphere 86.8
2481 Female, age 94, left hemisphere 85.0
2289 Male, age 61, right hemisphere 79.8
Claustrum
nTPM: 94.9
2198 Male, age 80, both hemispheres 101.2
2392 Female, age 94, both hemispheres 101.2
2491 Male, age 75, both hemispheres 98.9
2284 Female, age 91, both hemispheres 96.5
1956 Male, age 74, unknown 94.8
2292 Female, age 85, both hemispheres 92.6
2568 Male, age 61, both hemispheres 91.6
2196 Female, age 79, unknown 89.7
2645 Female, age 72, unknown 87.6
Globus pallidus, externus
nTPM: 84.6
2395 Male, age 75, both hemispheres 96.8
2772 Female, age 79, unknown 90.8
1996 Male, age 80, right hemisphere 85.0
2567 Female, age 72, unknown 76.6
2646 Male, age 61, right hemisphere 74.0
Globus pallidus, internus
nTPM: 88.8
2287 Male, age 75, right hemisphere 106.2
2778 Female, age 91, both hemispheres 95.1
1818 Male, age 74, unknown 88.9
2483 Female, age 94, right hemisphere 85.4
2111 Female, age 85, right hemisphere 83.3
2566 Female, age 72, unknown 82.4
2037 Male, age 80, right hemisphere 80.4
Nucleus accumbens
nTPM: 92.5
1856 Female, age 91, right hemisphere 99.6
2286 Male, age 75, left hemisphere 97.1
2824 Male, age 61, right hemisphere 95.2
2391 Female, age 94, left hemisphere 93.1
2698 Female, age 72, unknown 91.9
1783 Male, age 74, unknown 91.5
1806 Female, age 85, left hemisphere 90.3
2732 Male, age 80, right hemisphere 81.4
Nucleus basalis of Meynert
nTPM: 83.0
2821 Male, age 75, both hemispheres 92.0
2393 Male, age 80, right hemisphere 85.2
2484 Female, age 94, left hemisphere 82.2
2569 Male, age 61, both hemispheres 72.7
Nucleus of the diagonal band
nTPM: 105.5
2775 Male, age 80, right hemisphere 116.2
1812 Female, age 91, both hemispheres 113.5
2029 Male, age 61, right hemisphere 107.3
2195 Female, age 85, both hemispheres 103.1
1979 Male, age 74, unknown 87.5
Olfactory tubercle
nTPM: 101.5
1998 Female, age 91, both hemispheres 109.6
1846 Male, age 80, right hemisphere 103.8
2487 Female, age 94, left hemisphere 102.5
2856 Male, age 75, right hemisphere 90.2
Putamen
nTPM: 85.6
1937 Female, age 91, right hemisphere 94.1
1838 Male, age 80, right hemisphere 91.2
2466 Female, age 79, unknown 86.7
2482 Female, age 94, left hemisphere 85.9
1829 Male, age 74, unknown 83.8
2647 Male, age 75, left hemisphere 82.2
2489 Female, age 72, unknown 75.2
Septal nuclei
nTPM: 97.1
2031 Female, age 72, unknown 114.7
1960 Male, age 74, unknown 105.9
2009 Female, age 91, both hemispheres 104.1
2629 Female, age 94, right hemisphere 102.2
2059 Female, age 85, both hemispheres 88.7
2394 Male, age 61, left hemisphere 86.4
2199 Male, age 80, right hemisphere 78.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 109.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 89.7
Samples: 246

Max nTPM: 191.4
Min nTPM: 46.2
Std nTPM: 23.9
Median nTPM: 86.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 191.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 180.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 171.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 149.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 144.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 144.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 142.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 138.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 138.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 137.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 136.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 109.2
Samples: 246

Max nTPM: 192.1
Min nTPM: 47.3
Std nTPM: 28.0
Median nTPM: 112.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 192.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 178.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 177.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 164.9
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 164.8
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 161.9
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 160.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 157.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 156.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 155.4
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 153.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 92.1
Samples: 205

Max nTPM: 179.7
Min nTPM: 49.6
Std nTPM: 22.6
Median nTPM: 90.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 179.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 151.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 150.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 142.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 139.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 137.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 137.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 136.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 135.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 135.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 130.3
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.6
FF:10164-103B2 76 years, female 98.6
Globus pallidus
Scaled Tags Per Million: 104.2
FF:10175-103C4 60 years, female 131.0
FF:10161-103A8 76 years, female 77.5
Nucleus accumbens
Scaled Tags Per Million: 124.4
FF:10037-101F1 23-56 years, mixed 124.4
Putamen
Scaled Tags Per Million: 125.3
FF:10176-103C5 60 years, female 125.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 71.3
Pig sample Sample description nTPM
Caudate
nTPM: 57.9
Samples: 4

Max nTPM: 66.8
Min nTPM: 53.1
Sample A Female 53.4
Sample B Female 58.3
Sample C Male 66.8
Sample D Male 53.1
Putamen
nTPM: 62.8
Samples: 4

Max nTPM: 82.2
Min nTPM: 50.3
Sample A Female 59.7
Sample B Female 50.3
Sample C Male 82.2
Sample D Male 59.1
Septum
nTPM: 71.3
Samples: 4

Max nTPM: 88.4
Min nTPM: 56.1
Sample A Female 75.5
Sample B Female 65.1
Sample C Male 88.4
Sample D Male 56.1
Ventral pallidum
nTPM: 64.7
Samples: 4

Max nTPM: 73.9
Min nTPM: 56.3
Sample A Female 63.6
Sample B Female 64.8
Sample C Male 73.9
Sample D Male 56.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 94.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 74.9
Samples: 4

Max nTPM: 76.7
Min nTPM: 73.4
Sample A Male 76.7
Sample B Male 75.1
Sample C Female 73.4
Sample D Female 74.3
Septum
nTPM: 94.0
Samples: 4

Max nTPM: 99.2
Min nTPM: 89.2
Sample A Male 99.2
Sample B Male 95.3
Sample C Female 89.2
Sample D Female 92.4
Ventral forebrain
nTPM: 80.4
Samples: 4

Max nTPM: 83.7
Min nTPM: 75.6
Sample A Male 80.5
Sample B Male 83.7
Sample C Female 81.6
Sample D Female 75.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
71232582 Antisense, RP_050412_01_E11, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.1
71232582 Antisense, RP_050412_01_E11, Mouse strain C57BL/6J (56 days, male) 1.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.