MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:110.0 nTPM
HPA:110.0 nTPM
GTEx:122.3 nTPM
FANTOM5:105.3 Scaled Tags Per Million
Pig:84.8 nTPM
Mouse:97.2 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.3
2411 Female, age 72, unknown 112.2
2219 Male, age 76, both hemispheres 101.9
1870 Female, age 42, unknown 99.9
1827 Male, age 72, unknown 98.2
1833 Male, age 53, unknown 96.5
2666 Male, age 74, left hemisphere 95.8
1830 Male, age 51, unknown 91.9
2828 Female, age 72, unknown 88.0
2019 Male, age 18, unknown 84.4
2586 Male, age 75, left hemisphere 84.1
Dorsal raphe nucleus
nTPM: 104.0
2298 Female, age 72, unknown 115.0
2047 Male, age 72, unknown 111.0
2750 Male, age 76, both hemispheres 104.8
1828 Male, age 53, unknown 98.0
2016 Female, age 72, unknown 91.3
Inferior colliculus
nTPM: 88.9
2849 Male, age 72, unknown 90.4
1848 Female, age 42, unknown 90.2
2097 Female, age 72, unknown 90.2
1890 Male, age 53, unknown 84.8
Median raphe nucleus
nTPM: 110.0
2220 Male, age 76, midline 110.0
Pedunculopontine tegmental nucleus
nTPM: 103.3
2334 Male, age 80, both hemispheres 111.6
1921 Female, age 85, both hemispheres 107.0
2338 Male, age 61, both hemispheres 91.2
Periaquaductal grey, anterior
nTPM: 92.3
1947 Male, age 18, unknown 96.8
1795 Male, age 51, unknown 93.8
2502 Female, age 75, unknown 86.4
Periaquaductal grey, dorsal
nTPM: 92.7
1840 Male, age 53, unknown 101.5
2464 Female, age 72, unknown 92.9
2850 Male, age 76, both hemispheres 91.4
1831 Male, age 72, unknown 85.0
Periaquaductal grey, lateral
nTPM: 88.7
2053 Male, age 18, unknown 90.9
2272 Male, age 74, both hemispheres 89.6
2140 Male, age 76, both hemispheres 85.6
Pretectal area
nTPM: 91.6
2224 Female, age 72, unknown 104.0
2825 Male, age 18, unknown 96.1
1816 Male, age 51, unknown 92.6
2273 Male, age 74, both hemispheres 91.6
2667 Female, age 75, unknown 91.6
1944 Female, age 72, unknown 91.4
1817 Female, age 42, unknown 90.9
2007 Male, age 72, unknown 90.5
1815 Male, age 53, unknown 89.7
2316 Male, age 76, right hemisphere 84.6
2407 Male, age 75, both hemispheres 84.2
Red nucleus
nTPM: 84.8
1821 Female, age 72, unknown 92.6
2725 Female, age 75, unknown 91.3
2584 Male, age 75, left hemisphere 88.0
2588 Male, age 74, left hemisphere 85.7
1954 Female, age 42, unknown 84.3
2769 Male, age 72, unknown 83.9
2227 Male, age 72, unknown 83.7
2503 Female, age 72, unknown 83.5
1904 Male, age 53, unknown 81.7
2785 Male, age 18, unknown 81.6
1865 Male, age 51, unknown 81.0
2823 Male, age 76, right hemisphere 80.4
Substantia nigra
nTPM: 105.0
1916 Female, age 42, unknown 127.1
2241 Male, age 72, unknown 122.5
1851 Male, age 51, unknown 111.8
1941 Male, age 53, unknown 107.7
2699 Male, age 18, unknown 106.5
2409 Female, age 72, unknown 103.5
1889 Female, age 72, unknown 98.6
2665 Male, age 74, both hemispheres 91.8
2590 Female, age 75, unknown 90.1
2583 Male, age 75, right hemisphere 89.8
Superior colliculus
nTPM: 89.8
2668 Female, age 75, unknown 100.5
1796 Male, age 53, unknown 94.5
1839 Male, age 51, unknown 93.3
1895 Male, age 76, right hemisphere 92.7
2261 Male, age 18, unknown 90.3
2587 Male, age 74, left hemisphere 89.7
2087 Female, age 72, unknown 88.2
1913 Female, age 42, unknown 85.7
2664 Male, age 75, both hemispheres 83.8
1995 Male, age 72, unknown 79.3
Ventral tegmental area
nTPM: 103.6
1915 Female, age 42, unknown 112.3
2410 Female, age 72, unknown 109.7
2218 Male, age 76, both hemispheres 104.2
2223 Female, age 72, unknown 100.1
2021 Male, age 53, unknown 98.5
1942 Male, age 51, unknown 96.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 122.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 122.3
Samples: 139

Max nTPM: 276.7
Min nTPM: 56.1
Std nTPM: 46.6
Median nTPM: 113.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 276.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 269.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 258.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 255.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 235.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 231.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 220.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 212.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 209.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 207.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 199.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.3
FF:10158-103A5 76 years, female 105.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.8
Pig sample Sample description nTPM
Midbrain
nTPM: 74.0
Samples: 4

Max nTPM: 77.5
Min nTPM: 67.7
Sample A Female 77.5
Sample B Female 74.3
Sample C Male 76.6
Sample D Male 67.7
Periaqueductal gray
nTPM: 68.5
Samples: 3

Max nTPM: 83.3
Min nTPM: 60.1
Sample B Female 62.2
Sample C Male 83.3
Sample D Male 60.1
Substantia nigra
nTPM: 84.8
Samples: 4

Max nTPM: 128.2
Min nTPM: 45.7
Sample A Female 128.2
Sample B Female 69.0
Sample C Male 96.4
Sample D Male 45.7
Superior colliculi
nTPM: 67.7
Samples: 4

Max nTPM: 84.7
Min nTPM: 43.3
Sample A Female 84.7
Sample B Female 43.3
Sample C Male 76.9
Sample D Male 66.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 97.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 97.2
Samples: 4

Max nTPM: 102.0
Min nTPM: 90.7
Sample A Male 99.2
Sample B Male 102.0
Sample C Female 90.7
Sample D Female 96.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
71232582 Antisense, RP_050412_01_E11, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.