MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:238.4 nTPM
HPA:238.4 nTPM
GTEx:111.3 nTPM
FANTOM5:358.8 Scaled Tags Per Million
Pig:122.2 nTPM
Mouse:83.9 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 238.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 185.0
2586 Male, age 75, left hemisphere 253.3
1830 Male, age 51, unknown 215.6
1833 Male, age 53, unknown 199.1
2666 Male, age 74, left hemisphere 186.0
2019 Male, age 18, unknown 185.7
2828 Female, age 72, unknown 184.5
1870 Female, age 42, unknown 174.6
2411 Female, age 72, unknown 172.6
2219 Male, age 76, both hemispheres 145.6
1827 Male, age 72, unknown 132.6
Dorsal raphe nucleus
nTPM: 136.4
2750 Male, age 76, both hemispheres 188.7
1828 Male, age 53, unknown 142.5
2016 Female, age 72, unknown 135.3
2047 Male, age 72, unknown 131.3
2298 Female, age 72, unknown 84.1
Inferior colliculus
nTPM: 124.3
2849 Male, age 72, unknown 138.1
1890 Male, age 53, unknown 137.4
1848 Female, age 42, unknown 130.8
2097 Female, age 72, unknown 90.9
Median raphe nucleus
nTPM: 151.3
2220 Male, age 76, midline 151.3
Pedunculopontine tegmental nucleus
nTPM: 154.7
2338 Male, age 61, both hemispheres 180.9
2334 Male, age 80, both hemispheres 168.2
1921 Female, age 85, both hemispheres 114.9
Periaquaductal grey, anterior
nTPM: 126.3
2502 Female, age 75, unknown 143.7
1947 Male, age 18, unknown 126.5
1795 Male, age 51, unknown 108.6
Periaquaductal grey, dorsal
nTPM: 105.2
2464 Female, age 72, unknown 127.8
2850 Male, age 76, both hemispheres 107.4
1831 Male, age 72, unknown 106.3
1840 Male, age 53, unknown 79.2
Periaquaductal grey, lateral
nTPM: 116.6
2053 Male, age 18, unknown 120.1
2272 Male, age 74, both hemispheres 117.0
2140 Male, age 76, both hemispheres 112.6
Pretectal area
nTPM: 121.9
2407 Male, age 75, both hemispheres 167.3
1815 Male, age 53, unknown 150.0
2316 Male, age 76, right hemisphere 142.1
1817 Female, age 42, unknown 134.9
2007 Male, age 72, unknown 132.2
2825 Male, age 18, unknown 127.8
1816 Male, age 51, unknown 106.2
1944 Female, age 72, unknown 102.7
2273 Male, age 74, both hemispheres 96.9
2224 Female, age 72, unknown 95.4
2667 Female, age 75, unknown 85.5
Red nucleus
nTPM: 238.4
2503 Female, age 72, unknown 283.3
1865 Male, age 51, unknown 271.1
2588 Male, age 74, left hemisphere 262.7
2227 Male, age 72, unknown 262.6
1904 Male, age 53, unknown 260.9
2769 Male, age 72, unknown 254.4
2785 Male, age 18, unknown 228.9
2823 Male, age 76, right hemisphere 222.9
1954 Female, age 42, unknown 220.5
2584 Male, age 75, left hemisphere 209.4
2725 Female, age 75, unknown 196.9
1821 Female, age 72, unknown 187.3
Substantia nigra
nTPM: 165.6
2583 Male, age 75, right hemisphere 199.1
2590 Female, age 75, unknown 195.5
2699 Male, age 18, unknown 185.0
2665 Male, age 74, both hemispheres 179.0
1851 Male, age 51, unknown 175.9
1941 Male, age 53, unknown 155.9
2409 Female, age 72, unknown 153.4
1889 Female, age 72, unknown 148.4
1916 Female, age 42, unknown 146.1
2241 Male, age 72, unknown 117.2
Superior colliculus
nTPM: 155.0
1913 Female, age 42, unknown 196.8
1995 Male, age 72, unknown 195.2
2668 Female, age 75, unknown 184.1
2587 Male, age 74, left hemisphere 165.2
2664 Male, age 75, both hemispheres 160.9
1839 Male, age 51, unknown 151.6
1895 Male, age 76, right hemisphere 131.1
1796 Male, age 53, unknown 127.7
2261 Male, age 18, unknown 124.9
2087 Female, age 72, unknown 112.2
Ventral tegmental area
nTPM: 175.7
2223 Female, age 72, unknown 245.4
2410 Female, age 72, unknown 193.2
2218 Male, age 76, both hemispheres 168.6
2021 Male, age 53, unknown 154.2
1942 Male, age 51, unknown 151.4
1915 Female, age 42, unknown 141.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.3
Samples: 139

Max nTPM: 251.9
Min nTPM: 36.6
Std nTPM: 47.8
Median nTPM: 101.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 251.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 248.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 240.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 224.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 218.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 217.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 210.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 209.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 205.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 195.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 191.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 358.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 358.8
FF:10158-103A5 76 years, female 358.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 122.2
Pig sample Sample description nTPM
Midbrain
nTPM: 122.2
Samples: 4

Max nTPM: 192.8
Min nTPM: 73.0
Sample A Female 192.8
Sample B Female 129.2
Sample C Male 93.8
Sample D Male 73.0
Periaqueductal gray
nTPM: 89.5
Samples: 3

Max nTPM: 114.6
Min nTPM: 76.4
Sample B Female 114.6
Sample C Male 77.6
Sample D Male 76.4
Substantia nigra
nTPM: 113.7
Samples: 4

Max nTPM: 144.5
Min nTPM: 95.7
Sample A Female 109.2
Sample B Female 95.7
Sample C Male 105.5
Sample D Male 144.5
Superior colliculi
nTPM: 96.3
Samples: 4

Max nTPM: 111.4
Min nTPM: 64.1
Sample A Female 104.4
Sample B Female 64.1
Sample C Male 111.4
Sample D Male 105.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.9
Samples: 4

Max nTPM: 89.3
Min nTPM: 71.4
Sample A Male 71.4
Sample B Male 89.3
Sample C Female 89.2
Sample D Female 85.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
70300923 Antisense, RP_050607_02_G01, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.