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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:238.0 nTPM
HPA:238.0 nTPM
FANTOM5:268.0 Scaled Tags Per Million
Pig:100.9 nTPM
Mouse:87.0 nTPM
Allen mouse:7.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 238.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 142.6
2032 Female, age 42, unknown 173.0
2497 Male, age 66, unknown 160.3
2396 Male, age 61, right hemisphere 94.6
Centromedial thalamic nucleus
nTPM: 238.0
2279 Female, age 85, left hemisphere 338.2
2401 Male, age 76, right hemisphere 137.8
Habenula
nTPM: 77.6
2203 Male, age 61, left hemisphere 83.3
2252 Male, age 62, unknown 81.0
1957 Male, age 80, both hemispheres 74.6
2276 Male, age 66, unknown 71.5
Lateral geniculate body
nTPM: 151.6
2659 Male, age 66, unknown 189.1
2841 Male, age 80, both hemispheres 173.3
2575 Female, age 94, right hemisphere 167.6
2035 Female, age 72, unknown 164.9
2399 Male, age 61, left hemisphere 145.3
2857 Male, age 74, right hemisphere 141.6
1953 Male, age 62, unknown 130.5
2106 Female, age 67, right hemisphere 100.3
Lateral thalamic nuclei
nTPM: 153.8
2577 Male, age 74, both hemispheres 222.8
2661 Female, age 72, unknown 190.8
2573 Female, age 94, left hemisphere 140.3
2765 Female, age 67, both hemispheres 118.5
1903 Male, age 76, left hemisphere 96.7
Medial dorsal thalamic nucleus
nTPM: 117.7
2660 Female, age 72, unknown 204.0
2572 Female, age 94, right hemisphere 173.9
2576 Male, age 74, both hemispheres 150.9
2492 Male, age 75, right hemisphere 124.9
1859 Male, age 76, both hemispheres 124.0
1930 Female, age 42, unknown 112.6
2283 Male, age 80, right hemisphere 108.7
2039 Female, age 72, unknown 100.6
1810 Male, age 48, unknown 96.1
2026 Male, age 62, unknown 90.4
2498 Male, age 66, unknown 87.8
2402 Female, age 67, both hemispheres 84.1
1971 Male, age 61, right hemisphere 72.1
Medial geniculate body
nTPM: 148.7
2571 Male, age 75, right hemisphere 268.2
2217 Female, age 72, unknown 179.3
2207 Male, age 80, right hemisphere 158.7
2657 Male, age 74, right hemisphere 121.3
2650 Female, age 94, left hemisphere 121.1
2049 Male, age 76, both hemispheres 104.5
1811 Female, age 42, unknown 87.5
Nucleus reuniens
nTPM: 205.5
2210 Female, age 85, left hemisphere 374.3
2205 Male, age 80, left hemisphere 171.2
2212 Female, age 67, left hemisphere 71.0
Nucleus rhomboideus
nTPM: 203.5
2280 Female, age 85, left hemisphere 403.3
2206 Male, age 80, both hemispheres 116.6
2213 Female, age 67, left hemisphere 90.4
Posterior thalamic nucleus
nTPM: 164.2
2649 Female, age 94, both hemispheres 294.7
2655 Male, age 74, right hemisphere 152.6
2266 Male, age 76, right hemisphere 117.1
2495 Female, age 67, right hemisphere 92.1
Pulvinar
nTPM: 135.6
2398 Male, age 61, left hemisphere 151.1
2582 Female, age 72, unknown 147.9
1899 Female, age 42, unknown 146.8
2724 Male, age 74, right hemisphere 138.0
2214 Male, age 76, right hemisphere 134.9
1929 Male, age 48, unknown 133.7
2496 Female, age 67, right hemisphere 131.4
1932 Male, age 80, right hemisphere 128.4
1972 Male, age 62, unknown 125.1
2499 Male, age 66, unknown 118.6
Subthalamic nucleus
nTPM: 207.2
2216 Male, age 48, unknown 250.6
2124 Male, age 62, unknown 245.8
2056 Female, age 72, unknown 235.5
2658 Male, age 74, both hemispheres 226.8
2282 Male, age 61, both hemispheres 224.0
2275 Male, age 66, unknown 210.4
2779 Female, age 42, unknown 175.7
2406 Female, age 72, unknown 88.5
Ventral posterolateral thalamic nucleus
nTPM: 160.3
2581 Female, age 72, unknown 214.3
2578 Male, age 74, both hemispheres 214.0
2740 Male, age 76, right hemisphere 172.1
2570 Male, age 75, right hemisphere 141.6
2397 Male, age 61, right hemisphere 121.4
2197 Male, age 80, both hemispheres 98.2
Ventral posteromedial thalamic nucleus
nTPM: 140.5
2653 Male, age 74, both hemispheres 190.4
2281 Male, age 75, right hemisphere 149.3
2127 Male, age 76, right hemisphere 147.2
2202 Male, age 61, left hemisphere 111.4
2758 Male, age 80, both hemispheres 104.1
Ventral thalamic nuclei
nTPM: 165.1
2652 Male, age 74, left hemisphere 216.8
2858 Female, age 72, unknown 206.7
2580 Male, age 66, unknown 194.2
2291 Female, age 72, unknown 185.0
2204 Male, age 80, both hemispheres 164.1
1845 Male, age 48, unknown 150.7
1912 Female, age 42, unknown 125.0
1860 Male, age 76, both hemispheres 122.9
2285 Male, age 62, unknown 120.4
Ventromedial nucleus
nTPM: 49.8
1982 Female, age 72, unknown 54.9
1822 Female, age 42, unknown 44.7
Zona incerta
nTPM: 174.2
2822 Male, age 74, right hemisphere 216.0
2663 Female, age 72, unknown 189.6
2215 Male, age 66, unknown 177.3
2403 Male, age 62, unknown 170.1
2208 Male, age 80, right hemisphere 118.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 268.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 268.0
FF:10154-103A1 76 years, female 268.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.9
Pig sample Sample description nTPM
Thalamus
nTPM: 100.9
Samples: 4

Max nTPM: 133.9
Min nTPM: 81.7
Sample A Female 81.7
Sample B Female 99.8
Sample C Male 88.3
Sample D Male 133.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 87.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 87.0
Samples: 4

Max nTPM: 97.7
Min nTPM: 73.0
Sample A Male 73.0
Sample B Male 94.2
Sample C Female 83.2
Sample D Female 97.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 7.7
70300923 Antisense, RP_050607_02_G01, Mouse strain C57BL/6J (56 days, male) 7.7

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