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CA11
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:240.8 nTPM
HPA:240.8 nTPM
GTEx:394.4 nTPM
FANTOM5:321.0 Scaled Tags Per Million
Pig:160.8 nTPM
Mouse:104.3 nTPM
Allen mouse:16.1 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 240.8
Sample id Sample description nTPM
Amygdala
nTPM: 185.5
2517 Female, age 94, left hemisphere 209.2
2514 Male, age 75, right hemisphere 185.7
2814 Male, age 76, right hemisphere 179.9
2695 Female, age 67, right hemisphere 179.3
1987 Female, age 91, left hemisphere 173.7
Basal amygdala
nTPM: 240.8
2827 Female, age 67, right hemisphere 281.2
2243 Female, age 91, right hemisphere 249.1
2110 Male, age 80, left hemisphere 243.1
2685 Female, age 94, left hemisphere 242.4
2609 Male, age 75, right hemisphere 230.7
1955 Male, age 76, both hemispheres 198.4
Central amygdala
nTPM: 205.4
2826 Female, age 94, left hemisphere 283.0
2239 Male, age 80, left hemisphere 217.2
2515 Male, age 75, right hemisphere 181.5
1905 Male, age 76, both hemispheres 173.8
2701 Female, age 91, right hemisphere 171.4
Corticomedial amygdala
nTPM: 236.4
2535 Female, age 67, right hemisphere 289.7
2829 Male, age 80, left hemisphere 260.0
2428 Male, age 75, right hemisphere 224.5
2242 Female, age 91, right hemisphere 223.6
2429 Female, age 94, left hemisphere 211.4
2240 Male, age 76, both hemispheres 209.2
Lateral amygdala
nTPM: 223.7
2534 Female, age 94, left hemisphere 274.1
2830 Female, age 67, right hemisphere 242.2
2256 Male, age 80, left hemisphere 236.0
2516 Male, age 75, right hemisphere 207.1
2255 Female, age 91, right hemisphere 192.2
1883 Male, age 76, both hemispheres 190.8
Stria terminalis, bed nucleus
nTPM: 200.3
1974 Female, age 91, both hemispheres 221.9
2486 Female, age 94, both hemispheres 217.3
2201 Male, age 74, unknown 161.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 394.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 394.4
Samples: 152

Max nTPM: 1558.1
Min nTPM: 27.2
Std nTPM: 179.2
Median nTPM: 377.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1558.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 868.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 806.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 793.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 763.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 749.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 747.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 703.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 697.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 684.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 669.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 652.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 649.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 602.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 584.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 582.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 573.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 563.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 563.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 557.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 554.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 547.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 537.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 533.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 530.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 524.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 518.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 518.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 516.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 508.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 497.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 494.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 486.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 484.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 483.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 477.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 477.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 473.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 471.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 471.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 469.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 466.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 461.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 461.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 454.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 453.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 449.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 449.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 447.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 441.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 440.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 439.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 436.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 434.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 422.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 420.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 415.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 415.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 411.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 409.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 402.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 402.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 399.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 395.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 395.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 394.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 394.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 390.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 390.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 389.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 388.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 387.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 382.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 382.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 378.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 377.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 376.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 374.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 372.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 366.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 363.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 362.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 355.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 354.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 351.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 350.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 346.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 345.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 345.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 343.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 341.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 341.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 338.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 324.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 323.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 322.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 319.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 318.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 318.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 315.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 308.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 307.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 304.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 304.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 303.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 301.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 296.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 295.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 293.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 289.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 288.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 285.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 280.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 271.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 263.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 260.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 258.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 257.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 256.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 249.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 249.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 247.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 245.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 243.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 241.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 241.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 236.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 234.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 232.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 232.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 231.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 225.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 224.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 224.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 219.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 215.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 215.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 206.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 200.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 196.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 194.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 192.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 189.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 186.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 181.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 180.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 173.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 170.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 161.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 151.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 93.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 27.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 321.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 321.0
FF:10151-102I7 76 years, female 321.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 160.8
Pig sample Sample description nTPM
Amygdala
nTPM: 160.8
Samples: 4

Max nTPM: 218.5
Min nTPM: 131.3
Sample A Female 218.5
Sample B Female 131.3
Sample C Male 159.6
Sample D Male 133.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 104.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 104.3
Samples: 4

Max nTPM: 128.4
Min nTPM: 94.7
Sample A Male 94.7
Sample B Male 96.4
Sample C Female 128.4
Sample D Female 97.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.1
68797501 Antisense, RP_050125_02_E12, Mouse strain C57BL/6J (56 days, male) 16.1

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