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U2AF2
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  • U2AF2
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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6.968
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:73.0 nTPM
HPA:73.0 nTPM
FANTOM5:115.4 Scaled Tags Per Million
Pig:59.5 nTPM

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA043562
Pons mean intensity 6.968
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 3.242
Parabrachial nucleus 0.050
Principle sensory trigeminal nucleus 2.550
Locus coeruleus 6.076
Pontine nucleus 2.408
Vestibular nucleus 1.590
Pontine reticular nucleus, oral 2.162
Lateral lemniscus 6.968
Superior paraolivary nucleus 0.409

PONS - HPA Brain RNA-seq
Max nTPM 73.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 69.3
2090 Male, age 80, both hemispheres 72.9
2188 Female, age 91, both hemispheres 72.7
1984 Male, age 76, both hemispheres 67.7
2301 Female, age 85, both hemispheres 63.9
Dorsal cochlear nucleus
nTPM: 68.0
2802 Male, age 74, right hemisphere 69.0
2378 Male, age 80, both hemispheres 68.9
2187 Female, age 91, both hemispheres 68.3
2058 Male, age 76, both hemispheres 67.2
2370 Male, age 61, both hemispheres 66.8
Dorsal tegmental nucleus
nTPM: 68.9
2083 Male, age 80, both hemispheres 72.4
2358 Male, age 61, both hemispheres 68.8
2326 Male, age 74, both hemispheres 68.4
1936 Male, age 76, left hemisphere 66.1
Dorsolateral tegmental area
nTPM: 70.8
2337 Male, age 61, both hemispheres 75.1
2654 Male, age 80, both hemispheres 70.6
2751 Female, age 85, both hemispheres 70.4
2360 Male, age 74, both hemispheres 69.8
2141 Male, age 76, both hemispheres 68.0
Kolliker-Fuse nucleus
nTPM: 70.0
2793 Female, age 91, left hemisphere 71.2
2315 Male, age 76, right hemisphere 70.7
2163 Male, age 80, both hemispheres 68.1
Lateral lemniscal nuclei
nTPM: 67.5
2320 Female, age 91, left hemisphere 69.8
2746 Female, age 85, left hemisphere 68.9
2453 Male, age 74, right hemisphere 68.7
2169 Male, age 76, both hemispheres 66.4
2036 Male, age 80, both hemispheres 63.5
Lateral parabrachial nucleus
nTPM: 70.5
2013 Male, age 80, both hemispheres 72.2
2792 Male, age 76, both hemispheres 71.0
2139 Female, age 85, right hemisphere 70.3
2790 Male, age 61, both hemispheres 68.4
Lateral vestibular nucleus
nTPM: 67.2
2311 Male, age 80, both hemispheres 68.4
2184 Male, age 76, both hemispheres 66.1
Locus coeruleus
nTPM: 68.3
2123 Female, age 91, both hemispheres 71.3
2317 Female, age 72, unknown 70.4
2014 Male, age 55, unknown 69.8
1980 Male, age 76, both hemispheres 69.6
2720 Male, age 74, both hemispheres 66.8
2162 Male, age 80, both hemispheres 66.2
2788 Male, age 74, unknown 64.0
Medial olivary nucleus
nTPM: 73.0
1943 Male, age 61, both hemispheres 76.9
2138 Female, age 91, both hemispheres 73.8
2851 Male, age 80, both hemispheres 71.0
1962 Male, age 76, both hemispheres 70.3
Medial parabrachial nucleus
nTPM: 69.8
2463 Female, age 85, right hemisphere 72.0
2170 Female, age 91, both hemispheres 71.2
2156 Male, age 61, both hemispheres 70.6
2786 Male, age 76, both hemispheres 67.6
2854 Male, age 80, both hemispheres 67.6
Medial periolivary nuclei
nTPM: 69.1
2081 Male, age 80, both hemispheres 72.0
2063 Male, age 76, both hemispheres 70.2
2791 Male, age 74, right hemisphere 68.7
2458 Female, age 91, both hemispheres 67.8
2171 Female, age 85, both hemispheres 66.7
Motor facial nucleus
nTPM: 67.3
2062 Male, age 76, both hemispheres 70.0
2365 Male, age 74, right hemisphere 69.5
2126 Male, age 61, both hemispheres 67.1
2697 Female, age 85, both hemispheres 66.7
2795 Female, age 91, both hemispheres 65.5
2327 Male, age 80, both hemispheres 65.1
Motor trigeminal nucleus
nTPM: 69.3
2335 Male, age 61, both hemispheres 71.3
2560 Male, age 74, both hemispheres 70.3
2079 Male, age 80, both hemispheres 68.9
2309 Male, age 76, both hemispheres 68.0
2321 Female, age 91, both hemispheres 67.9
Nuclei of the trapezoid body
nTPM: 65.9
1983 Male, age 76, both hemispheres 68.3
2166 Male, age 80, both hemispheres 66.6
2159 Male, age 61, both hemispheres 66.1
2735 Female, age 85, both hemispheres 65.0
2368 Female, age 91, both hemispheres 63.3
Paramedian reticular nucleus
nTPM: 66.3
2057 Male, age 80, both hemispheres 70.9
2050 Female, age 85, both hemispheres 68.2
2313 Male, age 61, both hemispheres 64.4
2052 Male, age 76, both hemispheres 61.7
Pontine nuclei
nTPM: 71.4
2787 Female, age 85, both hemispheres 75.0
2115 Male, age 80, left hemisphere 72.2
2319 Female, age 91, both hemispheres 71.8
1863 Male, age 55, unknown 71.7
2109 Female, age 72, unknown 71.7
2454 Male, age 74, left hemisphere 70.6
1968 Male, age 76, left hemisphere 70.5
2727 Male, age 61, right hemisphere 67.5
Pontine raphe nucleus
nTPM: 68.4
2122 Female, age 85, midline 68.8
2853 Male, age 76, midline 68.1
Posteroventral cochlear nucleus
nTPM: 70.2
2135 Female, age 91, both hemispheres 76.8
2341 Male, age 80, both hemispheres 70.0
2070 Male, age 76, both hemispheres 69.9
2752 Female, age 85, both hemispheres 67.2
2371 Male, age 61, both hemispheres 67.0
Principal sensory trigeminal nucleus
nTPM: 67.7
2367 Female, age 91, left hemisphere 69.1
2158 Male, age 61, both hemispheres 68.3
2008 Male, age 80, left hemisphere 67.7
2324 Male, age 76, both hemispheres 65.9
Reticular pontine nucleus, caudal
nTPM: 69.1
2559 Male, age 74, both hemispheres 70.4
2092 Male, age 76, both hemispheres 70.3
2457 Female, age 91, both hemispheres 68.3
2332 Male, age 80, right hemisphere 67.3
Reticular pontine nucleus, oral
nTPM: 70.3
1939 Male, age 80, both hemispheres 72.4
2012 Female, age 85, both hemispheres 70.6
2366 Female, age 91, both hemispheres 70.2
2361 Male, age 74, both hemispheres 69.3
2167 Male, age 76, both hemispheres 69.0
Reticulotegmental nucleus
nTPM: 67.9
2452 Male, age 74, both hemispheres 71.1
2333 Male, age 80, both hemispheres 68.3
2322 Female, age 91, both hemispheres 66.9
2325 Male, age 76, both hemispheres 65.3
Spinal trigeminal nucleus, oral
nTPM: 67.6
1978 Male, age 76, both hemispheres 68.5
2737 Female, age 85, both hemispheres 67.9
2164 Male, age 80, both hemispheres 66.6
Subcoeruleus area
nTPM: 69.1
2369 Female, age 85, left hemisphere 71.5
2323 Female, age 91, left hemisphere 69.2
2451 Male, age 74, both hemispheres 69.0
2089 Male, age 76, left hemisphere 68.1
1958 Male, age 80, both hemispheres 67.9
Superior olive
nTPM: 69.8
2364 Male, age 74, right hemisphere 73.3
1875 Female, age 85, both hemispheres 70.9
2020 Male, age 76, both hemispheres 70.3
2561 Female, age 91, both hemispheres 67.4
2329 Male, age 80, right hemisphere 67.3
Superior vestibular nucleus
nTPM: 70.1
2061 Male, age 76, both hemispheres 71.5
2383 Male, age 74, both hemispheres 71.1
2015 Male, age 80, both hemispheres 67.8
Ventral periolivary nuclei
nTPM: 66.5
2023 Male, age 76, both hemispheres 69.1
2165 Male, age 80, both hemispheres 67.2
2130 Female, age 85, both hemispheres 65.8
2794 Female, age 91, left hemisphere 64.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 68.1
2456 Female, age 91, both hemispheres 70.1
1959 Male, age 76, both hemispheres 69.2
2449 Male, age 74, both hemispheres 68.5
2161 Male, age 80, both hemispheres 67.2
2359 Male, age 61, both hemispheres 67.2
2840 Female, age 85, both hemispheres 66.7

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 115.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 115.4
FF:10182-103D2 60 years, female 117.4
FF:10165-103B3 76 years, female 113.4
Pons
Scaled Tags Per Million: 89.8
FF:10033-101E6 18-54 years, mixed 89.8

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 59.5
Pig sample Sample description nTPM
Pons
nTPM: 59.5
Samples: 4

Max nTPM: 67.2
Min nTPM: 49.0
Sample A Female 67.2
Sample B Female 49.0
Sample C Male 58.4
Sample D Male 63.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.