MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:268.7 nTPM
HPA:268.7 nTPM
GTEx:159.6 nTPM
FANTOM5:401.0 Scaled Tags Per Million
Pig:97.4 nTPM
Mouse:20.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 268.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 215.3
2586 Male, age 75, left hemisphere 304.5
2666 Male, age 74, left hemisphere 304.0
1833 Male, age 53, unknown 247.8
1830 Male, age 51, unknown 239.6
2828 Female, age 72, unknown 232.9
1870 Female, age 42, unknown 185.4
2219 Male, age 76, both hemispheres 182.1
2411 Female, age 72, unknown 156.1
1827 Male, age 72, unknown 152.3
2019 Male, age 18, unknown 148.0
Dorsal raphe nucleus
nTPM: 139.7
2016 Female, age 72, unknown 194.5
2750 Male, age 76, both hemispheres 175.0
1828 Male, age 53, unknown 146.3
2047 Male, age 72, unknown 113.6
2298 Female, age 72, unknown 69.3
Inferior colliculus
nTPM: 142.4
2849 Male, age 72, unknown 214.8
1848 Female, age 42, unknown 148.9
1890 Male, age 53, unknown 135.3
2097 Female, age 72, unknown 70.7
Median raphe nucleus
nTPM: 115.0
2220 Male, age 76, midline 115.0
Pedunculopontine tegmental nucleus
nTPM: 152.6
2334 Male, age 80, both hemispheres 176.1
2338 Male, age 61, both hemispheres 163.1
1921 Female, age 85, both hemispheres 118.6
Periaquaductal grey, anterior
nTPM: 139.2
2502 Female, age 75, unknown 152.6
1947 Male, age 18, unknown 135.1
1795 Male, age 51, unknown 129.8
Periaquaductal grey, dorsal
nTPM: 147.4
1831 Male, age 72, unknown 156.5
2464 Female, age 72, unknown 156.4
2850 Male, age 76, both hemispheres 156.4
1840 Male, age 53, unknown 120.3
Periaquaductal grey, lateral
nTPM: 143.1
2053 Male, age 18, unknown 173.6
2140 Male, age 76, both hemispheres 135.5
2272 Male, age 74, both hemispheres 120.1
Pretectal area
nTPM: 142.3
2407 Male, age 75, both hemispheres 205.5
1815 Male, age 53, unknown 195.2
2316 Male, age 76, right hemisphere 187.3
2825 Male, age 18, unknown 181.3
1817 Female, age 42, unknown 151.3
2007 Male, age 72, unknown 118.1
2667 Female, age 75, unknown 116.4
1944 Female, age 72, unknown 113.9
2224 Female, age 72, unknown 109.2
1816 Male, age 51, unknown 98.9
2273 Male, age 74, both hemispheres 88.6
Red nucleus
nTPM: 268.7
2588 Male, age 74, left hemisphere 337.4
2503 Female, age 72, unknown 325.9
1904 Male, age 53, unknown 313.6
2823 Male, age 76, right hemisphere 301.7
1865 Male, age 51, unknown 291.9
2769 Male, age 72, unknown 272.0
2227 Male, age 72, unknown 267.9
2584 Male, age 75, left hemisphere 236.9
1954 Female, age 42, unknown 228.2
2785 Male, age 18, unknown 218.8
2725 Female, age 75, unknown 217.2
1821 Female, age 72, unknown 213.2
Substantia nigra
nTPM: 184.4
2699 Male, age 18, unknown 285.4
2665 Male, age 74, both hemispheres 245.1
2590 Female, age 75, unknown 231.5
2583 Male, age 75, right hemisphere 216.1
2409 Female, age 72, unknown 190.6
1851 Male, age 51, unknown 180.2
1889 Female, age 72, unknown 139.3
2241 Male, age 72, unknown 124.3
1916 Female, age 42, unknown 118.6
1941 Male, age 53, unknown 113.0
Superior colliculus
nTPM: 194.7
1995 Male, age 72, unknown 277.2
2664 Male, age 75, both hemispheres 229.7
1913 Female, age 42, unknown 227.5
2587 Male, age 74, left hemisphere 221.9
1839 Male, age 51, unknown 207.4
2668 Female, age 75, unknown 190.6
1895 Male, age 76, right hemisphere 185.4
1796 Male, age 53, unknown 154.1
2261 Male, age 18, unknown 127.7
2087 Female, age 72, unknown 125.6
Ventral tegmental area
nTPM: 154.3
2410 Female, age 72, unknown 180.8
2021 Male, age 53, unknown 159.4
1942 Male, age 51, unknown 157.1
2223 Female, age 72, unknown 148.8
1915 Female, age 42, unknown 147.9
2218 Male, age 76, both hemispheres 131.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 159.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.6
Samples: 139

Max nTPM: 442.7
Min nTPM: 29.0
Std nTPM: 89.2
Median nTPM: 135.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 442.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 422.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 407.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 383.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 372.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 365.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 362.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 358.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 328.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 301.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 300.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 401.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 401.0
FF:10158-103A5 76 years, female 401.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.4
Pig sample Sample description nTPM
Midbrain
nTPM: 84.4
Samples: 4

Max nTPM: 111.5
Min nTPM: 61.7
Sample A Female 87.4
Sample B Female 111.5
Sample C Male 61.7
Sample D Male 77.1
Periaqueductal gray
nTPM: 82.2
Samples: 3

Max nTPM: 94.9
Min nTPM: 70.9
Sample B Female 94.9
Sample C Male 70.9
Sample D Male 80.9
Substantia nigra
nTPM: 97.4
Samples: 4

Max nTPM: 145.5
Min nTPM: 72.3
Sample A Female 77.6
Sample B Female 72.3
Sample C Male 94.2
Sample D Male 145.5
Superior colliculi
nTPM: 76.2
Samples: 4

Max nTPM: 104.3
Min nTPM: 51.9
Sample A Female 74.6
Sample B Female 51.9
Sample C Male 73.9
Sample D Male 104.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.3
Samples: 4

Max nTPM: 22.6
Min nTPM: 16.8
Sample A Male 16.8
Sample B Male 21.6
Sample C Female 20.1
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68196925 Antisense, RP_041116_01_F03, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.