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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:187.4 nTPM
HPA:187.4 nTPM
GTEx:132.3 nTPM
FANTOM5:287.5 Scaled Tags Per Million
Pig:79.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 187.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 123.7
2565 Male, age 75, midline 185.0
2194 Female, age 79, both hemispheres 132.2
2048 Male, age 55, midline 108.3
2816 Male, age 47, midline 103.2
1981 Female, age 72, midline 90.0
Cervical spinal cord, dorsal horn
nTPM: 97.2
2173 Female, age 72, unknown 106.9
1877 Male, age 55, unknown 104.8
2721 Male, age 90, both hemispheres 97.9
2069 Male, age 47, both hemispheres 97.4
2296 Male, age 66, both hemispheres 93.1
2297 Male, age 75, both hemispheres 83.3
Cervical spinal cord, ventral horn
nTPM: 187.4
2480 Male, age 75, both hemispheres 277.0
2809 Male, age 90, both hemispheres 236.9
2295 Male, age 66, both hemispheres 208.5
2820 Female, age 79, both hemispheres 180.7
2068 Male, age 55, unknown 141.3
2098 Female, age 72, unknown 80.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 132.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 132.3
Samples: 159

Max nTPM: 429.7
Min nTPM: 44.7
Std nTPM: 66.2
Median nTPM: 117.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 429.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 351.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 344.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 324.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 303.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 294.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 292.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 276.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 273.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 268.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 257.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 248.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 241.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 230.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 227.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 220.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 213.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 210.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 202.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 199.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 198.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 195.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 193.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 190.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 188.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 183.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 183.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 182.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 177.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 176.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 174.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 173.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 171.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 170.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 168.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 163.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 160.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 157.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 155.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 154.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 152.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 152.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 151.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 150.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 149.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 146.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 146.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 145.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 145.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 144.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 143.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 143.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 142.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 141.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 141.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 140.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 138.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 138.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 138.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 137.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 133.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 133.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 132.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 131.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 130.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 130.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 129.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 128.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 128.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 128.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 127.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 126.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 124.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 123.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 121.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 121.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 119.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 119.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 118.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 117.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 115.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 113.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 112.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 112.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 112.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 110.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 110.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 110.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 108.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 107.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 107.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 105.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 105.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 105.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 104.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 102.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 101.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 101.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 97.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 97.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 97.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 96.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 96.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 95.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 95.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 95.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 94.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 93.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 93.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 92.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 92.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 90.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 88.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 88.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 87.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 87.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 87.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 86.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 86.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 84.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 84.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 83.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 82.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 82.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 81.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 80.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 80.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 79.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 77.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 77.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 77.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 76.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 76.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 75.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 74.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 73.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 72.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 71.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 70.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 70.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 70.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 69.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 68.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 68.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 66.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 65.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 62.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 61.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 61.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 58.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 57.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 54.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 54.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 53.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 49.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 48.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 44.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 287.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 287.5
FF:10181-103D1 60 years, female 310.4
FF:10159-103A6 76 years, female 264.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 73.3
Samples: 4

Max nTPM: 90.3
Min nTPM: 54.6
Sample A Female 74.2
Sample B Female 74.0
Sample C Male 54.6
Sample D Male 90.3
Ventral spinal cord
nTPM: 79.5
Samples: 4

Max nTPM: 85.6
Min nTPM: 74.6
Sample A Female 85.6
Sample B Female 78.5
Sample C Male 74.6
Sample D Male 79.3

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