MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.1 nTPM
HPA:59.1 nTPM
GTEx:36.3 nTPM
FANTOM5:50.6 Scaled Tags Per Million
Pig:62.7 nTPM
Mouse:87.5 nTPM
Allen mouse:10.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.2
2019 Male, age 18, unknown 66.2
2666 Male, age 74, left hemisphere 57.6
2828 Female, age 72, unknown 56.7
1827 Male, age 72, unknown 56.0
2586 Male, age 75, left hemisphere 55.9
2411 Female, age 72, unknown 55.6
1833 Male, age 53, unknown 54.9
1870 Female, age 42, unknown 53.7
1830 Male, age 51, unknown 53.4
2219 Male, age 76, both hemispheres 52.5
Dorsal raphe nucleus
nTPM: 55.9
2298 Female, age 72, unknown 60.0
1828 Male, age 53, unknown 59.6
2047 Male, age 72, unknown 54.7
2750 Male, age 76, both hemispheres 53.1
2016 Female, age 72, unknown 52.1
Inferior colliculus
nTPM: 56.9
2097 Female, age 72, unknown 58.9
1890 Male, age 53, unknown 58.8
1848 Female, age 42, unknown 56.7
2849 Male, age 72, unknown 53.4
Median raphe nucleus
nTPM: 54.2
2220 Male, age 76, midline 54.2
Pedunculopontine tegmental nucleus
nTPM: 56.5
2338 Male, age 61, both hemispheres 59.9
2334 Male, age 80, both hemispheres 56.5
1921 Female, age 85, both hemispheres 52.9
Periaquaductal grey, anterior
nTPM: 54.5
1795 Male, age 51, unknown 56.4
1947 Male, age 18, unknown 53.8
2502 Female, age 75, unknown 53.2
Periaquaductal grey, dorsal
nTPM: 53.9
2850 Male, age 76, both hemispheres 59.1
1831 Male, age 72, unknown 54.1
2464 Female, age 72, unknown 52.0
1840 Male, age 53, unknown 50.4
Periaquaductal grey, lateral
nTPM: 57.8
2272 Male, age 74, both hemispheres 68.7
2140 Male, age 76, both hemispheres 53.4
2053 Male, age 18, unknown 51.2
Pretectal area
nTPM: 59.1
1817 Female, age 42, unknown 67.6
2007 Male, age 72, unknown 63.8
1816 Male, age 51, unknown 63.7
2273 Male, age 74, both hemispheres 63.2
1815 Male, age 53, unknown 60.7
1944 Female, age 72, unknown 60.7
2667 Female, age 75, unknown 60.6
2407 Male, age 75, both hemispheres 54.6
2224 Female, age 72, unknown 53.3
2825 Male, age 18, unknown 51.4
2316 Male, age 76, right hemisphere 50.2
Red nucleus
nTPM: 57.9
2785 Male, age 18, unknown 64.2
1821 Female, age 72, unknown 62.9
1904 Male, age 53, unknown 59.0
1954 Female, age 42, unknown 58.5
2769 Male, age 72, unknown 58.5
1865 Male, age 51, unknown 58.4
2227 Male, age 72, unknown 58.1
2823 Male, age 76, right hemisphere 57.5
2725 Female, age 75, unknown 57.2
2503 Female, age 72, unknown 56.2
2588 Male, age 74, left hemisphere 53.2
2584 Male, age 75, left hemisphere 50.6
Substantia nigra
nTPM: 58.2
1916 Female, age 42, unknown 64.4
1889 Female, age 72, unknown 63.7
1851 Male, age 51, unknown 60.5
2665 Male, age 74, both hemispheres 58.6
1941 Male, age 53, unknown 57.2
2241 Male, age 72, unknown 56.6
2699 Male, age 18, unknown 56.3
2590 Female, age 75, unknown 55.7
2409 Female, age 72, unknown 55.1
2583 Male, age 75, right hemisphere 53.7
Superior colliculus
nTPM: 55.2
2087 Female, age 72, unknown 58.4
1796 Male, age 53, unknown 57.8
2587 Male, age 74, left hemisphere 57.1
2261 Male, age 18, unknown 57.0
2668 Female, age 75, unknown 56.9
1913 Female, age 42, unknown 55.1
1995 Male, age 72, unknown 54.5
1895 Male, age 76, right hemisphere 54.0
1839 Male, age 51, unknown 51.8
2664 Male, age 75, both hemispheres 49.1
Ventral tegmental area
nTPM: 56.9
2410 Female, age 72, unknown 62.6
2218 Male, age 76, both hemispheres 59.5
1915 Female, age 42, unknown 57.8
2223 Female, age 72, unknown 56.5
1942 Male, age 51, unknown 53.9
2021 Male, age 53, unknown 51.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.3
Samples: 139

Max nTPM: 55.2
Min nTPM: 19.7
Std nTPM: 7.7
Median nTPM: 35.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 55.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 53.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 52.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 52.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 52.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 51.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 50.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 50.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 50.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 50.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.6
FF:10158-103A5 76 years, female 50.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.7
Pig sample Sample description nTPM
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 76.3
Min nTPM: 40.3
Sample A Female 55.1
Sample B Female 40.3
Sample C Male 76.3
Sample D Male 49.1
Periaqueductal gray
nTPM: 37.5
Samples: 3

Max nTPM: 43.4
Min nTPM: 33.3
Sample B Female 35.9
Sample C Male 43.4
Sample D Male 33.3
Substantia nigra
nTPM: 50.2
Samples: 4

Max nTPM: 54.3
Min nTPM: 46.1
Sample A Female 52.6
Sample B Female 46.1
Sample C Male 54.3
Sample D Male 47.7
Superior colliculi
nTPM: 62.8
Samples: 4

Max nTPM: 69.3
Min nTPM: 59.0
Sample A Female 63.5
Sample B Female 59.0
Sample C Male 69.3
Sample D Male 59.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 87.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.5
Samples: 4

Max nTPM: 92.3
Min nTPM: 84.1
Sample A Male 92.3
Sample B Male 84.1
Sample C Female 88.6
Sample D Female 85.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.9
512767 Antisense, RP_040809_02_D05, Mouse strain C57BL/6J (56 days, male) 10.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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