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BCAS1
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:506.5 nTPM
HPA:506.5 nTPM
GTEx:526.7 nTPM
FANTOM5:224.5 Scaled Tags Per Million
Pig:82.4 nTPM
Mouse:61.8 nTPM
Allen mouse:1.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 506.5
Sample id Sample description nTPM
Amygdala
nTPM: 420.3
2695 Female, age 67, right hemisphere 510.7
2814 Male, age 76, right hemisphere 444.8
2517 Female, age 94, left hemisphere 402.7
2514 Male, age 75, right hemisphere 380.1
1987 Female, age 91, left hemisphere 363.1
Basal amygdala
nTPM: 439.3
2827 Female, age 67, right hemisphere 667.8
2685 Female, age 94, left hemisphere 429.5
2110 Male, age 80, left hemisphere 413.4
2609 Male, age 75, right hemisphere 399.3
1955 Male, age 76, both hemispheres 373.0
2243 Female, age 91, right hemisphere 352.7
Central amygdala
nTPM: 454.5
2826 Female, age 94, left hemisphere 671.4
2239 Male, age 80, left hemisphere 409.2
1905 Male, age 76, both hemispheres 401.1
2701 Female, age 91, right hemisphere 399.8
2515 Male, age 75, right hemisphere 391.1
Corticomedial amygdala
nTPM: 377.4
2535 Female, age 67, right hemisphere 490.2
2428 Male, age 75, right hemisphere 369.5
2829 Male, age 80, left hemisphere 364.7
2240 Male, age 76, both hemispheres 360.5
2429 Female, age 94, left hemisphere 357.2
2242 Female, age 91, right hemisphere 322.1
Lateral amygdala
nTPM: 506.5
2830 Female, age 67, right hemisphere 787.6
2534 Female, age 94, left hemisphere 491.9
2256 Male, age 80, left hemisphere 472.3
2516 Male, age 75, right hemisphere 472.0
1883 Male, age 76, both hemispheres 423.3
2255 Female, age 91, right hemisphere 391.8
Stria terminalis, bed nucleus
nTPM: 349.2
2201 Male, age 74, unknown 365.2
1974 Female, age 91, both hemispheres 361.6
2486 Female, age 94, both hemispheres 320.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 526.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 526.7
Samples: 152

Max nTPM: 2044.6
Min nTPM: 13.4
Std nTPM: 399.2
Median nTPM: 380.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2044.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1817.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1785.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1701.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1632.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1567.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1382.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1346.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1336.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1283.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1241.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1237.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1219.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1210.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1105.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1078.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1058.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1043.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 995.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 992.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 992.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 921.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 907.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 901.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 879.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 867.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 864.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 854.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 853.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 852.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 833.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 807.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 791.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 764.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 759.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 733.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 726.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 724.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 719.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 709.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 705.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 663.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 642.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 640.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 623.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 609.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 586.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 580.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 565.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 554.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 541.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 524.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 514.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 509.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 498.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 498.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 496.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 495.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 494.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 491.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 490.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 464.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 463.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 460.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 456.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 454.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 444.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 433.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 427.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 426.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 413.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 409.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 405.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 403.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 387.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 381.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 380.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 379.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 368.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 366.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 354.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 353.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 353.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 350.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 345.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 339.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 338.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 338.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 337.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 336.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 325.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 319.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 313.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 309.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 304.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 299.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 298.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 298.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 287.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 280.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 279.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 278.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 271.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 269.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 267.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 265.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 265.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 260.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 255.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 253.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 249.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 244.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 242.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 238.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 229.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 226.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 223.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 220.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 220.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 220.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 215.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 214.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 211.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 210.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 199.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 198.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 197.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 195.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 190.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 189.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 188.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 185.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 182.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 181.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 180.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 180.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 174.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 173.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 171.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 164.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 164.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 164.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 163.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 162.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 161.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 142.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 140.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 134.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 132.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 128.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 86.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 13.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 224.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 224.5
FF:10151-102I7 76 years, female 224.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.4
Pig sample Sample description nTPM
Amygdala
nTPM: 82.4
Samples: 4

Max nTPM: 123.5
Min nTPM: 36.9
Sample A Female 68.2
Sample B Female 123.5
Sample C Male 101.0
Sample D Male 36.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 61.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 61.8
Samples: 4

Max nTPM: 96.0
Min nTPM: 48.5
Sample A Male 52.6
Sample B Male 50.1
Sample C Female 96.0
Sample D Female 48.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.9
77371831 Antisense, RP_070116_02_E08, Mouse strain C57BL/6J (56 days, male) 1.9

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