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BCAS1
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:649.9 nTPM
HPA:649.9 nTPM
FANTOM5:866.5 Scaled Tags Per Million
Pig:339.7 nTPM
Allen mouse:3.4 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 649.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 622.6
2188 Female, age 91, both hemispheres 717.1
2301 Female, age 85, both hemispheres 715.1
2090 Male, age 80, both hemispheres 599.1
1984 Male, age 76, both hemispheres 459.1
Dorsal cochlear nucleus
nTPM: 576.3
2802 Male, age 74, right hemisphere 599.8
2187 Female, age 91, both hemispheres 596.7
2378 Male, age 80, both hemispheres 588.2
2370 Male, age 61, both hemispheres 560.7
2058 Male, age 76, both hemispheres 536.2
Dorsal tegmental nucleus
nTPM: 546.2
2083 Male, age 80, both hemispheres 621.0
2326 Male, age 74, both hemispheres 541.6
1936 Male, age 76, left hemisphere 519.4
2358 Male, age 61, both hemispheres 502.7
Dorsolateral tegmental area
nTPM: 516.4
2654 Male, age 80, both hemispheres 619.3
2751 Female, age 85, both hemispheres 590.8
2337 Male, age 61, both hemispheres 535.6
2360 Male, age 74, both hemispheres 423.1
2141 Male, age 76, both hemispheres 413.3
Kolliker-Fuse nucleus
nTPM: 574.5
2793 Female, age 91, left hemisphere 746.3
2163 Male, age 80, both hemispheres 560.4
2315 Male, age 76, right hemisphere 416.8
Lateral lemniscal nuclei
nTPM: 530.9
2320 Female, age 91, left hemisphere 592.0
2453 Male, age 74, right hemisphere 542.8
2036 Male, age 80, both hemispheres 529.4
2169 Male, age 76, both hemispheres 526.8
2746 Female, age 85, left hemisphere 463.6
Lateral parabrachial nucleus
nTPM: 533.1
2792 Male, age 76, both hemispheres 669.4
2013 Male, age 80, both hemispheres 523.6
2790 Male, age 61, both hemispheres 513.8
2139 Female, age 85, right hemisphere 425.5
Lateral vestibular nucleus
nTPM: 584.4
2311 Male, age 80, both hemispheres 618.9
2184 Male, age 76, both hemispheres 549.8
Locus coeruleus
nTPM: 404.4
2720 Male, age 74, both hemispheres 519.0
2162 Male, age 80, both hemispheres 446.6
2788 Male, age 74, unknown 383.2
2317 Female, age 72, unknown 381.7
2123 Female, age 91, both hemispheres 380.0
2014 Male, age 55, unknown 367.7
1980 Male, age 76, both hemispheres 352.7
Medial olivary nucleus
nTPM: 649.9
1962 Male, age 76, both hemispheres 842.7
2851 Male, age 80, both hemispheres 607.3
1943 Male, age 61, both hemispheres 602.2
2138 Female, age 91, both hemispheres 547.2
Medial parabrachial nucleus
nTPM: 581.6
2170 Female, age 91, both hemispheres 643.4
2463 Female, age 85, right hemisphere 582.5
2786 Male, age 76, both hemispheres 571.6
2854 Male, age 80, both hemispheres 569.7
2156 Male, age 61, both hemispheres 541.1
Medial periolivary nuclei
nTPM: 539.3
2458 Female, age 91, both hemispheres 670.4
2081 Male, age 80, both hemispheres 583.8
2063 Male, age 76, both hemispheres 513.8
2171 Female, age 85, both hemispheres 491.9
2791 Male, age 74, right hemisphere 436.5
Motor facial nucleus
nTPM: 581.4
2697 Female, age 85, both hemispheres 707.4
2327 Male, age 80, both hemispheres 627.2
2795 Female, age 91, both hemispheres 610.9
2126 Male, age 61, both hemispheres 593.3
2365 Male, age 74, right hemisphere 481.7
2062 Male, age 76, both hemispheres 467.6
Motor trigeminal nucleus
nTPM: 586.4
2321 Female, age 91, both hemispheres 683.8
2309 Male, age 76, both hemispheres 598.8
2079 Male, age 80, both hemispheres 566.8
2560 Male, age 74, both hemispheres 545.6
2335 Male, age 61, both hemispheres 536.9
Nuclei of the trapezoid body
nTPM: 543.0
2166 Male, age 80, both hemispheres 653.0
2368 Female, age 91, both hemispheres 596.3
2159 Male, age 61, both hemispheres 521.3
1983 Male, age 76, both hemispheres 493.7
2735 Female, age 85, both hemispheres 450.5
Paramedian reticular nucleus
nTPM: 587.5
2052 Male, age 76, both hemispheres 756.5
2057 Male, age 80, both hemispheres 552.3
2050 Female, age 85, both hemispheres 528.9
2313 Male, age 61, both hemispheres 512.3
Pontine nuclei
nTPM: 534.5
2319 Female, age 91, both hemispheres 661.2
2115 Male, age 80, left hemisphere 582.8
1968 Male, age 76, left hemisphere 579.1
2454 Male, age 74, left hemisphere 525.7
1863 Male, age 55, unknown 504.8
2787 Female, age 85, both hemispheres 501.4
2109 Female, age 72, unknown 492.6
2727 Male, age 61, right hemisphere 428.5
Pontine raphe nucleus
nTPM: 458.2
2122 Female, age 85, midline 490.7
2853 Male, age 76, midline 425.7
Posteroventral cochlear nucleus
nTPM: 647.2
2341 Male, age 80, both hemispheres 807.8
2135 Female, age 91, both hemispheres 774.8
2371 Male, age 61, both hemispheres 598.2
2070 Male, age 76, both hemispheres 566.0
2752 Female, age 85, both hemispheres 489.0
Principal sensory trigeminal nucleus
nTPM: 535.3
2367 Female, age 91, left hemisphere 632.5
2324 Male, age 76, both hemispheres 557.9
2008 Male, age 80, left hemisphere 482.3
2158 Male, age 61, both hemispheres 468.5
Reticular pontine nucleus, caudal
nTPM: 606.2
2457 Female, age 91, both hemispheres 691.7
2332 Male, age 80, right hemisphere 607.2
2092 Male, age 76, both hemispheres 570.8
2559 Male, age 74, both hemispheres 555.2
Reticular pontine nucleus, oral
nTPM: 572.8
2366 Female, age 91, both hemispheres 740.5
1939 Male, age 80, both hemispheres 553.1
2167 Male, age 76, both hemispheres 546.6
2361 Male, age 74, both hemispheres 517.8
2012 Female, age 85, both hemispheres 506.0
Reticulotegmental nucleus
nTPM: 597.0
2322 Female, age 91, both hemispheres 690.5
2333 Male, age 80, both hemispheres 608.7
2452 Male, age 74, both hemispheres 573.1
2325 Male, age 76, both hemispheres 515.8
Spinal trigeminal nucleus, oral
nTPM: 518.6
2164 Male, age 80, both hemispheres 618.9
1978 Male, age 76, both hemispheres 496.0
2737 Female, age 85, both hemispheres 441.0
Subcoeruleus area
nTPM: 539.9
2369 Female, age 85, left hemisphere 644.0
2089 Male, age 76, left hemisphere 544.9
1958 Male, age 80, both hemispheres 538.2
2451 Male, age 74, both hemispheres 520.2
2323 Female, age 91, left hemisphere 452.1
Superior olive
nTPM: 573.8
2561 Female, age 91, both hemispheres 673.6
2020 Male, age 76, both hemispheres 665.7
2329 Male, age 80, right hemisphere 619.1
1875 Female, age 85, both hemispheres 478.2
2364 Male, age 74, right hemisphere 432.5
Superior vestibular nucleus
nTPM: 474.0
2015 Male, age 80, both hemispheres 524.3
2061 Male, age 76, both hemispheres 461.9
2383 Male, age 74, both hemispheres 435.6
Ventral periolivary nuclei
nTPM: 569.0
2023 Male, age 76, both hemispheres 629.5
2794 Female, age 91, left hemisphere 607.2
2165 Male, age 80, both hemispheres 594.1
2130 Female, age 85, both hemispheres 445.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 539.4
2456 Female, age 91, both hemispheres 610.1
2161 Male, age 80, both hemispheres 564.4
1959 Male, age 76, both hemispheres 550.5
2840 Female, age 85, both hemispheres 548.6
2449 Male, age 74, both hemispheres 483.2
2359 Male, age 61, both hemispheres 479.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 866.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 866.5
FF:10182-103D2 60 years, female 1235.6
FF:10165-103B3 76 years, female 497.3
Pons
Scaled Tags Per Million: 838.1
FF:10033-101E6 18-54 years, mixed 838.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 339.7
Pig sample Sample description nTPM
Pons
nTPM: 339.8
Samples: 4

Max nTPM: 504.6
Min nTPM: 202.6
Sample A Female 202.6
Sample B Female 218.9
Sample C Male 432.9
Sample D Male 504.6

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 3.4
77371831 Antisense, RP_070116_02_E08, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.