MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:660.7 nTPM
HPA:660.7 nTPM
GTEx:867.1 nTPM
FANTOM5:695.6 Scaled Tags Per Million
Pig:365.1 nTPM
Mouse:272.7 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 660.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 536.9
2666 Male, age 74, left hemisphere 623.8
1830 Male, age 51, unknown 617.4
1833 Male, age 53, unknown 591.9
2019 Male, age 18, unknown 548.2
2586 Male, age 75, left hemisphere 532.3
1870 Female, age 42, unknown 529.7
2411 Female, age 72, unknown 522.5
2828 Female, age 72, unknown 497.3
2219 Male, age 76, both hemispheres 471.1
1827 Male, age 72, unknown 434.8
Dorsal raphe nucleus
nTPM: 439.2
2750 Male, age 76, both hemispheres 582.7
2016 Female, age 72, unknown 444.7
1828 Male, age 53, unknown 436.0
2047 Male, age 72, unknown 386.6
2298 Female, age 72, unknown 345.8
Inferior colliculus
nTPM: 434.2
2849 Male, age 72, unknown 459.2
1890 Male, age 53, unknown 453.4
1848 Female, age 42, unknown 441.1
2097 Female, age 72, unknown 383.0
Median raphe nucleus
nTPM: 446.6
2220 Male, age 76, midline 446.6
Pedunculopontine tegmental nucleus
nTPM: 503.1
2338 Male, age 61, both hemispheres 534.9
2334 Male, age 80, both hemispheres 528.6
1921 Female, age 85, both hemispheres 445.9
Periaquaductal grey, anterior
nTPM: 400.0
1947 Male, age 18, unknown 414.2
2502 Female, age 75, unknown 413.1
1795 Male, age 51, unknown 372.7
Periaquaductal grey, dorsal
nTPM: 374.6
2464 Female, age 72, unknown 445.0
1831 Male, age 72, unknown 378.7
1840 Male, age 53, unknown 338.0
2850 Male, age 76, both hemispheres 336.8
Periaquaductal grey, lateral
nTPM: 366.6
2053 Male, age 18, unknown 387.3
2272 Male, age 74, both hemispheres 380.1
2140 Male, age 76, both hemispheres 332.4
Pretectal area
nTPM: 408.9
1815 Male, age 53, unknown 482.6
1817 Female, age 42, unknown 460.5
2316 Male, age 76, right hemisphere 459.0
2407 Male, age 75, both hemispheres 440.7
2007 Male, age 72, unknown 427.7
2825 Male, age 18, unknown 421.8
1944 Female, age 72, unknown 366.2
2667 Female, age 75, unknown 363.5
1816 Male, age 51, unknown 363.3
2224 Female, age 72, unknown 362.6
2273 Male, age 74, both hemispheres 350.4
Red nucleus
nTPM: 660.7
1865 Male, age 51, unknown 760.5
2503 Female, age 72, unknown 731.1
2588 Male, age 74, left hemisphere 719.0
1904 Male, age 53, unknown 693.5
2823 Male, age 76, right hemisphere 680.7
2227 Male, age 72, unknown 670.2
2769 Male, age 72, unknown 663.7
1821 Female, age 72, unknown 657.3
1954 Female, age 42, unknown 622.9
2725 Female, age 75, unknown 616.4
2785 Male, age 18, unknown 596.8
2584 Male, age 75, left hemisphere 516.6
Substantia nigra
nTPM: 452.2
2665 Male, age 74, both hemispheres 489.8
2409 Female, age 72, unknown 474.8
2583 Male, age 75, right hemisphere 469.5
1889 Female, age 72, unknown 469.2
2590 Female, age 75, unknown 467.9
2699 Male, age 18, unknown 466.2
1851 Male, age 51, unknown 451.0
1941 Male, age 53, unknown 424.4
2241 Male, age 72, unknown 417.2
1916 Female, age 42, unknown 392.1
Superior colliculus
nTPM: 465.7
1995 Male, age 72, unknown 531.5
1913 Female, age 42, unknown 513.6
2587 Male, age 74, left hemisphere 513.5
1895 Male, age 76, right hemisphere 506.4
2668 Female, age 75, unknown 505.9
1839 Male, age 51, unknown 495.5
2664 Male, age 75, both hemispheres 421.1
1796 Male, age 53, unknown 407.2
2087 Female, age 72, unknown 382.9
2261 Male, age 18, unknown 379.5
Ventral tegmental area
nTPM: 469.7
2223 Female, age 72, unknown 610.4
2410 Female, age 72, unknown 492.0
2218 Male, age 76, both hemispheres 442.6
1942 Male, age 51, unknown 437.0
2021 Male, age 53, unknown 425.5
1915 Female, age 42, unknown 410.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 867.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 867.1
Samples: 139

Max nTPM: 2450.4
Min nTPM: 146.0
Std nTPM: 504.6
Median nTPM: 693.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2450.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2275.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 2253.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2205.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2053.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 2023.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 2016.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1806.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1795.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1760.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1754.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 695.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 695.6
FF:10158-103A5 76 years, female 695.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 365.1
Pig sample Sample description nTPM
Midbrain
nTPM: 365.1
Samples: 4

Max nTPM: 725.2
Min nTPM: 182.3
Sample A Female 725.2
Sample B Female 348.7
Sample C Male 182.3
Sample D Male 204.3
Periaqueductal gray
nTPM: 207.1
Samples: 3

Max nTPM: 252.9
Min nTPM: 173.0
Sample B Female 252.9
Sample C Male 173.0
Sample D Male 195.3
Substantia nigra
nTPM: 318.8
Samples: 4

Max nTPM: 475.3
Min nTPM: 171.5
Sample A Female 358.1
Sample B Female 171.5
Sample C Male 270.2
Sample D Male 475.3
Superior colliculi
nTPM: 298.8
Samples: 4

Max nTPM: 384.2
Min nTPM: 140.8
Sample A Female 384.2
Sample B Female 140.8
Sample C Male 322.3
Sample D Male 347.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 272.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 272.7
Samples: 4

Max nTPM: 293.7
Min nTPM: 258.9
Sample A Male 293.7
Sample B Male 258.9
Sample C Female 261.0
Sample D Female 277.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
77371831 Antisense, RP_070116_02_E08, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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