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BCAS1
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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:584.8 nTPM
HPA:584.8 nTPM
GTEx:1589.8 nTPM
FANTOM5:943.0 Scaled Tags Per Million
Pig:593.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 584.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 488.8
2565 Male, age 75, midline 536.6
2816 Male, age 47, midline 502.5
2194 Female, age 79, both hemispheres 476.2
2048 Male, age 55, midline 470.6
1981 Female, age 72, midline 457.9
Cervical spinal cord, dorsal horn
nTPM: 448.4
2296 Male, age 66, both hemispheres 515.9
2173 Female, age 72, unknown 510.0
1877 Male, age 55, unknown 446.0
2069 Male, age 47, both hemispheres 433.6
2721 Male, age 90, both hemispheres 394.9
2297 Male, age 75, both hemispheres 390.1
Cervical spinal cord, ventral horn
nTPM: 584.8
2480 Male, age 75, both hemispheres 763.0
2809 Male, age 90, both hemispheres 629.1
2295 Male, age 66, both hemispheres 573.4
2820 Female, age 79, both hemispheres 563.7
2068 Male, age 55, unknown 542.1
2098 Female, age 72, unknown 437.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1589.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1589.8
Samples: 159

Max nTPM: 5246.1
Min nTPM: 335.4
Std nTPM: 836.5
Median nTPM: 1400.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 5246.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 4910.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 4744.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3884.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3589.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3437.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 3339.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3291.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 3193.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 3185.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 2959.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2870.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2773.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2739.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2721.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2681.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2663.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2646.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2561.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2473.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2471.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2465.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2374.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2344.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2300.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2226.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2197.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 2138.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2059.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2031.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2020.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2009.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1993.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1985.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1971.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1960.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1947.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1946.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1941.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1908.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1907.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1878.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1855.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1833.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1822.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1818.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1806.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1773.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1770.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1755.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1730.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1721.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1720.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1710.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1709.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1708.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1704.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1701.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1699.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1674.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1672.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1653.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1640.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1618.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1598.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1586.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1581.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1564.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1532.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1524.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1518.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1455.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1455.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1441.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1421.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1412.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1406.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1403.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1402.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1400.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1389.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1388.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1386.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1379.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1372.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1370.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1342.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1328.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1327.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1318.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1311.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1301.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1296.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1296.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1289.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1267.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1263.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1263.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1240.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1238.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1236.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1219.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1215.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1198.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1191.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1178.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1176.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1130.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1108.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1107.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1103.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1081.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1080.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1044.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1043.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1040.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1037.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1024.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1015.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1001.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 992.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 984.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 980.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 974.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 971.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 970.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 950.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 944.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 930.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 920.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 920.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 917.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 906.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 906.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 902.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 899.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 898.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 898.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 893.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 883.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 862.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 829.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 812.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 764.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 763.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 761.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 738.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 676.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 665.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 612.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 579.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 554.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 531.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 523.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 492.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 449.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 399.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 381.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 335.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 943.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 943.0
FF:10181-103D1 60 years, female 1068.4
FF:10159-103A6 76 years, female 817.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 593.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 455.7
Samples: 4

Max nTPM: 479.7
Min nTPM: 422.5
Sample A Female 444.0
Sample B Female 479.7
Sample C Male 422.5
Sample D Male 476.6
Ventral spinal cord
nTPM: 593.0
Samples: 4

Max nTPM: 725.4
Min nTPM: 538.6
Sample A Female 546.1
Sample B Female 561.8
Sample C Male 538.6
Sample D Male 725.4

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