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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:69.4 nTPM
HPA:69.4 nTPM
GTEx:82.3 nTPM
FANTOM5:187.5 Scaled Tags Per Million
Pig:41.2 nTPM
Mouse:92.8 nTPM
Allen mouse:2.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 69.4
Sample id Sample description nTPM
Amygdala
nTPM: 67.7
2514 Male, age 75, right hemisphere 75.8
2814 Male, age 76, right hemisphere 74.2
1987 Female, age 91, left hemisphere 64.5
2517 Female, age 94, left hemisphere 62.7
2695 Female, age 67, right hemisphere 61.3
Basal amygdala
nTPM: 59.6
2609 Male, age 75, right hemisphere 67.9
1955 Male, age 76, both hemispheres 63.5
2243 Female, age 91, right hemisphere 61.1
2110 Male, age 80, left hemisphere 60.5
2685 Female, age 94, left hemisphere 56.1
2827 Female, age 67, right hemisphere 48.3
Central amygdala
nTPM: 61.9
1905 Male, age 76, both hemispheres 69.3
2515 Male, age 75, right hemisphere 65.5
2239 Male, age 80, left hemisphere 61.5
2701 Female, age 91, right hemisphere 58.8
2826 Female, age 94, left hemisphere 54.4
Corticomedial amygdala
nTPM: 61.6
2428 Male, age 75, right hemisphere 71.3
2240 Male, age 76, both hemispheres 64.1
2429 Female, age 94, left hemisphere 63.0
2829 Male, age 80, left hemisphere 62.7
2242 Female, age 91, right hemisphere 60.2
2535 Female, age 67, right hemisphere 48.6
Lateral amygdala
nTPM: 59.7
2516 Male, age 75, right hemisphere 71.7
1883 Male, age 76, both hemispheres 69.8
2534 Female, age 94, left hemisphere 59.0
2256 Male, age 80, left hemisphere 55.8
2255 Female, age 91, right hemisphere 54.4
2830 Female, age 67, right hemisphere 47.7
Stria terminalis, bed nucleus
nTPM: 69.4
1974 Female, age 91, both hemispheres 74.4
2486 Female, age 94, both hemispheres 71.0
2201 Male, age 74, unknown 62.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 82.3
Samples: 152

Max nTPM: 169.6
Min nTPM: 30.2
Std nTPM: 21.3
Median nTPM: 83.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 169.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 130.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 130.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 124.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 123.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 120.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 118.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 118.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 116.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 113.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 112.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 111.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 110.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 110.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 108.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 108.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 107.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 106.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 105.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 104.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 104.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 104.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 104.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 103.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 103.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 103.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 102.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 102.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 101.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 100.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 99.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 99.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 97.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 97.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 96.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 96.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 95.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 95.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 94.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 93.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 92.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 92.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 92.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 91.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 91.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 91.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 91.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 91.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 91.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 90.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 90.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 90.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 90.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 90.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 89.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 89.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 87.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 87.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 86.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 86.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 86.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 86.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 86.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 86.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 85.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 85.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 85.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 85.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 85.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 84.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 84.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 84.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 84.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 84.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 83.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 83.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 83.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 83.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 82.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 82.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 81.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 80.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 80.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 80.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 80.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 79.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 79.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 79.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 79.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 78.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 78.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 78.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 77.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 77.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 76.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 76.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 76.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 76.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 75.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 73.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 73.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 72.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 72.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 72.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 71.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 71.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 71.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 70.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 69.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 68.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 68.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 67.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 66.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 66.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 66.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 65.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 65.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 65.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 64.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 64.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 63.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 63.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 62.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 62.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 61.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 61.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 61.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 61.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 61.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 60.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 59.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 58.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 57.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 57.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 57.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 55.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 55.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 54.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 53.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 53.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 53.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 52.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 50.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 48.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 48.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 46.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 45.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 45.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 44.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 44.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 32.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 30.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 187.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 187.5
FF:10151-102I7 76 years, female 187.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 41.2
Pig sample Sample description nTPM
Amygdala
nTPM: 41.3
Samples: 4

Max nTPM: 55.3
Min nTPM: 32.0
Sample A Female 55.3
Sample B Female 37.5
Sample C Male 32.0
Sample D Male 40.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 92.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 92.9
Samples: 4

Max nTPM: 94.4
Min nTPM: 88.7
Sample A Male 94.1
Sample B Male 94.2
Sample C Female 88.7
Sample D Female 94.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.2
79539640 Antisense, RP_071018_01_B11, Mouse strain C57BL/6J (56 days, male) 2.2

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