MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.5 nTPM
HPA:47.5 nTPM
GTEx:44.1 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:72.3 nTPM
Mouse:66.9 nTPM
Allen mouse:8.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.5
2019 Male, age 18, unknown 46.0
2411 Female, age 72, unknown 45.7
1870 Female, age 42, unknown 45.0
1827 Male, age 72, unknown 44.5
1830 Male, age 51, unknown 44.2
1833 Male, age 53, unknown 44.2
2666 Male, age 74, left hemisphere 44.2
2219 Male, age 76, both hemispheres 44.1
2828 Female, age 72, unknown 43.9
2586 Male, age 75, left hemisphere 42.8
Dorsal raphe nucleus
nTPM: 45.9
2298 Female, age 72, unknown 47.3
2047 Male, age 72, unknown 46.5
2750 Male, age 76, both hemispheres 45.8
1828 Male, age 53, unknown 45.2
2016 Female, age 72, unknown 44.5
Inferior colliculus
nTPM: 45.5
2097 Female, age 72, unknown 46.0
2849 Male, age 72, unknown 45.4
1848 Female, age 42, unknown 45.3
1890 Male, age 53, unknown 45.2
Median raphe nucleus
nTPM: 45.7
2220 Male, age 76, midline 45.7
Pedunculopontine tegmental nucleus
nTPM: 46.9
2338 Male, age 61, both hemispheres 48.4
2334 Male, age 80, both hemispheres 46.8
1921 Female, age 85, both hemispheres 45.5
Periaquaductal grey, anterior
nTPM: 44.4
1795 Male, age 51, unknown 45.0
1947 Male, age 18, unknown 44.7
2502 Female, age 75, unknown 43.4
Periaquaductal grey, dorsal
nTPM: 44.7
2850 Male, age 76, both hemispheres 46.5
1840 Male, age 53, unknown 46.0
1831 Male, age 72, unknown 43.7
2464 Female, age 72, unknown 42.8
Periaquaductal grey, lateral
nTPM: 44.4
2272 Male, age 74, both hemispheres 45.8
2053 Male, age 18, unknown 43.7
2140 Male, age 76, both hemispheres 43.6
Pretectal area
nTPM: 46.1
1817 Female, age 42, unknown 49.4
1944 Female, age 72, unknown 48.3
2667 Female, age 75, unknown 47.0
1815 Male, age 53, unknown 46.7
1816 Male, age 51, unknown 46.5
2007 Male, age 72, unknown 46.3
2273 Male, age 74, both hemispheres 45.9
2224 Female, age 72, unknown 45.7
2407 Male, age 75, both hemispheres 44.5
2825 Male, age 18, unknown 44.3
2316 Male, age 76, right hemisphere 42.3
Red nucleus
nTPM: 45.0
1821 Female, age 72, unknown 48.2
2725 Female, age 75, unknown 46.6
2503 Female, age 72, unknown 45.6
2785 Male, age 18, unknown 45.4
1865 Male, age 51, unknown 45.1
1954 Female, age 42, unknown 45.1
2823 Male, age 76, right hemisphere 44.8
2769 Male, age 72, unknown 44.7
1904 Male, age 53, unknown 44.5
2588 Male, age 74, left hemisphere 43.8
2227 Male, age 72, unknown 43.3
2584 Male, age 75, left hemisphere 42.4
Substantia nigra
nTPM: 47.5
1916 Female, age 42, unknown 50.9
2241 Male, age 72, unknown 50.4
1851 Male, age 51, unknown 49.3
1889 Female, age 72, unknown 48.6
1941 Male, age 53, unknown 47.3
2699 Male, age 18, unknown 47.3
2665 Male, age 74, both hemispheres 46.3
2409 Female, age 72, unknown 45.7
2590 Female, age 75, unknown 45.6
2583 Male, age 75, right hemisphere 43.8
Superior colliculus
nTPM: 44.7
2587 Male, age 74, left hemisphere 46.6
1796 Male, age 53, unknown 46.2
1895 Male, age 76, right hemisphere 45.1
2668 Female, age 75, unknown 44.8
2261 Male, age 18, unknown 44.7
2087 Female, age 72, unknown 44.5
1839 Male, age 51, unknown 44.4
1995 Male, age 72, unknown 44.2
1913 Female, age 42, unknown 43.8
2664 Male, age 75, both hemispheres 43.3
Ventral tegmental area
nTPM: 46.2
2410 Female, age 72, unknown 50.5
2218 Male, age 76, both hemispheres 47.9
1915 Female, age 42, unknown 46.6
2021 Male, age 53, unknown 44.4
2223 Female, age 72, unknown 44.0
1942 Male, age 51, unknown 43.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.1
Samples: 139

Max nTPM: 68.9
Min nTPM: 32.7
Std nTPM: 7.3
Median nTPM: 42.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 68.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 67.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 67.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 66.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 66.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 59.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 59.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 56.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 55.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 55.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 54.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.5
FF:10158-103A5 76 years, female 31.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.3
Pig sample Sample description nTPM
Midbrain
nTPM: 65.0
Samples: 4

Max nTPM: 84.8
Min nTPM: 55.0
Sample A Female 84.8
Sample B Female 57.3
Sample C Male 62.9
Sample D Male 55.0
Periaqueductal gray
nTPM: 50.7
Samples: 3

Max nTPM: 54.3
Min nTPM: 44.9
Sample B Female 53.0
Sample C Male 54.3
Sample D Male 44.9
Substantia nigra
nTPM: 63.2
Samples: 4

Max nTPM: 74.5
Min nTPM: 57.1
Sample A Female 74.5
Sample B Female 62.3
Sample C Male 58.9
Sample D Male 57.1
Superior colliculi
nTPM: 72.3
Samples: 4

Max nTPM: 83.2
Min nTPM: 68.1
Sample A Female 83.2
Sample B Female 68.1
Sample C Male 69.3
Sample D Male 68.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 66.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.9
Samples: 4

Max nTPM: 68.1
Min nTPM: 65.5
Sample A Male 66.8
Sample B Male 68.1
Sample C Female 65.5
Sample D Female 67.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.4
68546272 Antisense, RP_050120_02_C07, Mouse strain C57BL/6J (56 days, male) 11.7
68499524 Antisense, RP_050118_01_G04, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.