We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
YBX1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • YBX1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:159.1 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:106.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA040304Antibody HPA057159Antibody CAB005875
Glial cells MediumHighNot detected
Neuronal cells MediumNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 159.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 159.1
Samples: 246

Max nTPM: 291.6
Min nTPM: 68.7
Std nTPM: 42.1
Median nTPM: 152.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 291.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 267.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 264.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 254.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 251.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 251.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 242.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 238.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 238.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 236.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 235.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 234.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 234.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 233.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 230.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 229.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 228.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 227.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 227.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 224.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 223.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 222.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 222.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 221.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 217.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 217.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 217.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 217.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 217.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 216.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 215.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 215.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 214.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 211.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 210.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 209.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 209.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 209.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 206.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 206.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 205.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 205.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 205.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 204.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 203.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 203.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 202.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 202.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 201.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 198.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 197.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 197.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 195.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 195.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 195.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 193.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 193.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 193.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 192.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 192.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 191.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 191.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 190.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 188.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 188.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 187.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 185.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 185.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 184.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 184.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 184.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 182.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 181.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 181.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 180.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 179.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 177.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 177.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 176.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 174.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 173.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 172.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 171.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 170.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 170.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 169.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 168.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 168.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 168.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 167.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 167.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 166.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 166.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 165.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 165.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 164.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 164.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 163.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 163.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 163.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 162.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 162.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 162.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 162.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 161.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 161.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 160.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 159.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 159.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 158.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 157.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 157.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 157.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 157.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 157.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 157.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 156.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 155.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 154.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 154.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 154.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 153.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 152.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 152.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 152.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 151.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 151.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 151.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 151.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 151.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 151.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 150.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 150.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 149.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 149.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 149.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 148.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 148.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 146.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 146.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 146.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 146.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 146.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 145.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 144.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 144.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 144.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 143.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 143.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 143.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 141.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 141.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 140.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 140.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 139.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 139.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 139.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 138.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 138.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 138.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 137.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 137.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 136.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 134.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 134.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 133.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 133.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 133.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 132.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 132.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 131.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 131.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 131.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 131.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 129.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 129.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 128.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 128.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 127.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 127.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 126.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 126.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 126.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 125.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 125.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 125.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 124.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 124.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 123.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 122.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 122.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 122.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 122.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 121.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 120.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 120.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 120.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 119.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 119.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 119.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 118.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 118.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 117.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 116.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 116.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 115.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 115.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 115.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 114.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 114.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 113.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 113.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 113.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 112.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 112.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 112.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 112.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 111.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 111.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 110.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 109.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 108.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 108.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 107.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 107.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 107.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 106.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 105.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 104.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 104.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 104.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 103.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 100.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 98.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 98.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 97.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 96.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 95.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 95.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 94.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 92.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 91.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 91.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 88.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 83.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 68.7
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.9
FF:10164-103B2 76 years, female 18.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.5
Pig sample Sample description nTPM
Caudate
nTPM: 106.5
Samples: 4

Max nTPM: 121.2
Min nTPM: 98.2
Sample A Female 98.2
Sample B Female 103.5
Sample C Male 121.2
Sample D Male 103.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.