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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:234.6 nTPM
HPA:234.6 nTPM
GTEx:219.6 nTPM
FANTOM5:311.1 Scaled Tags Per Million
Pig:45.8 nTPM
Mouse:156.9 nTPM
Allen mouse:1.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 234.6
Sample id Sample description nTPM
Amygdala
nTPM: 234.6
2814 Male, age 76, right hemisphere 245.4
2695 Female, age 67, right hemisphere 243.4
2514 Male, age 75, right hemisphere 243.1
1987 Female, age 91, left hemisphere 226.7
2517 Female, age 94, left hemisphere 214.6
Basal amygdala
nTPM: 212.1
2609 Male, age 75, right hemisphere 232.5
1955 Male, age 76, both hemispheres 223.1
2110 Male, age 80, left hemisphere 212.7
2243 Female, age 91, right hemisphere 203.9
2827 Female, age 67, right hemisphere 202.7
2685 Female, age 94, left hemisphere 197.7
Central amygdala
nTPM: 219.9
1905 Male, age 76, both hemispheres 234.5
2515 Male, age 75, right hemisphere 229.4
2826 Female, age 94, left hemisphere 221.4
2239 Male, age 80, left hemisphere 208.5
2701 Female, age 91, right hemisphere 205.7
Corticomedial amygdala
nTPM: 214.3
2428 Male, age 75, right hemisphere 242.6
2240 Male, age 76, both hemispheres 222.9
2429 Female, age 94, left hemisphere 214.5
2829 Male, age 80, left hemisphere 211.5
2242 Female, age 91, right hemisphere 206.7
2535 Female, age 67, right hemisphere 187.6
Lateral amygdala
nTPM: 217.3
2516 Male, age 75, right hemisphere 234.7
1883 Male, age 76, both hemispheres 228.8
2830 Female, age 67, right hemisphere 222.9
2534 Female, age 94, left hemisphere 212.8
2256 Male, age 80, left hemisphere 209.7
2255 Female, age 91, right hemisphere 194.6
Stria terminalis, bed nucleus
nTPM: 199.8
1974 Female, age 91, both hemispheres 203.5
2201 Male, age 74, unknown 202.0
2486 Female, age 94, both hemispheres 193.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 219.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 219.6
Samples: 152

Max nTPM: 398.4
Min nTPM: 139.3
Std nTPM: 43.1
Median nTPM: 208.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 398.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 330.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 321.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 321.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 294.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 293.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 292.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 290.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 288.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 288.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 284.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 282.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 282.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 280.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 277.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 274.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 274.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 273.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 273.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 272.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 272.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 269.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 267.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 266.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 264.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 261.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 261.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 261.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 259.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 258.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 256.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 255.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 253.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 252.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 252.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 252.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 250.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 250.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 249.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 249.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 249.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 248.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 246.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 244.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 244.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 243.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 243.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 243.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 243.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 241.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 241.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 239.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 238.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 236.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 234.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 233.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 230.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 229.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 228.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 226.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 226.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 222.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 222.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 222.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 221.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 220.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 219.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 218.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 217.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 214.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 214.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 213.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 213.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 210.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 210.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 208.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 207.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 207.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 207.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 206.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 206.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 206.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 206.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 205.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 204.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 204.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 204.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 204.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 204.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 203.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 201.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 201.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 200.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 200.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 200.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 199.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 199.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 199.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 198.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 198.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 198.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 197.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 196.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 196.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 192.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 191.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 191.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 190.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 188.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 188.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 187.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 187.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 186.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 186.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 185.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 185.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 184.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 184.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 184.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 184.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 183.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 182.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 182.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 182.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 181.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 180.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 179.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 179.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 179.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 178.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 177.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 176.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 176.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 174.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 172.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 172.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 170.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 168.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 167.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 164.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 163.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 162.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 161.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 160.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 159.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 159.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 158.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 150.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 150.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 147.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 143.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 139.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 311.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 311.1
FF:10151-102I7 76 years, female 311.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.8
Pig sample Sample description nTPM
Amygdala
nTPM: 45.8
Samples: 4

Max nTPM: 53.8
Min nTPM: 39.7
Sample A Female 53.8
Sample B Female 49.9
Sample C Male 39.7
Sample D Male 39.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 156.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 156.9
Samples: 4

Max nTPM: 162.0
Min nTPM: 152.0
Sample A Male 152.0
Sample B Male 155.0
Sample C Female 162.0
Sample D Female 158.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.7
73606534 Antisense, RP_051130_01_B05, Mouse strain C57BL/6J (56 days, male) 1.7

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