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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:197.7 nTPM
GTEx:197.7 nTPM
FANTOM5:36.4 Scaled Tags Per Million
Pig:171.8 nTPM
Mouse:582.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 197.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 197.7
Samples: 105

Max nTPM: 326.1
Min nTPM: 120.6
Std nTPM: 41.0
Median nTPM:
2_1 77 years, female 326.1
413_1 59 years, female 315.2
491_1 89 years, female 300.1
307_1 66 years, female 285.8
139_1 64 years, female 270.0
490_1 67 years, female 268.6
495_1 57 years, female 267.8
149_1 88 years, male 263.9
81_1 67 years, male 260.9
43_1 64 years, female 260.6
32_1 67 years, male 254.8
518_1 75 years, female 253.1
414_1 84 years, female 248.0
466_1 57 years, female 247.7
501_1 88 years, male 240.5
6_1 73 years, female 239.1
415_1 77 years, female 237.3
117_1 61 years, male 236.3
162_1 79 years, female 236.0
217_1 76 years, male 231.9
311_1 78 years, male 231.9
18_1 88 years, male 230.5
322_1 76 years, male 230.3
89_1 63 years, male 227.8
142_1 61 years, female 226.0
35_1 74 years, female 225.9
145_1 84 years, male 225.4
315_1 62 years, female 224.0
17_1 71 years, male 223.5
126_1 63 years, male 223.0
348_1 84 years, male 222.1
526_1 61 years, male 219.2
468_1 89 years, male 217.5
313_1 79 years, female 215.9
288_1 66 years, female 211.8
324_1 76 years, male 210.6
153_1 70 years, female 207.9
265_1 87 years, male 204.6
316_1 62 years, male 202.7
109_1 81 years, female 199.2
308_1 70 years, female 199.0
377_1 82 years, female 199.0
243_1 75 years, male 198.4
115_1 83 years, male 197.7
266_1 85 years, male 197.2
251_1 78 years, male 195.5
119_1 70 years, female 192.5
320_1 89 years, female 192.3
335_1 73 years, female 191.6
292_1 71 years, male 190.1
246_1 77 years, male 189.7
229_1 69 years, female 186.9
352_1 62 years, male 186.9
425_1 59 years, female 186.0
386_1 76 years, male 185.8
375_1 74 years, female 185.5
120_1 70 years, female 185.0
9_1 66 years, female 184.3
321_1 62 years, female 183.9
405_1 91 years, male 183.9
447_1 81 years, male 183.2
293_1 68 years, female 182.6
137_1 83 years, male 182.5
499_1 55 years, female 182.3
286_1 68 years, female 181.4
396_1 62 years, male 181.3
517_1 88 years, male 180.2
291_1 76 years, male 178.9
376_1 75 years, female 178.8
406_1 79 years, male 177.6
254_1 77 years, female 177.0
4_1 88 years, female 176.4
189_1 76 years, male 175.6
42_1 85 years, male 174.8
318_1 68 years, male 173.9
319_1 81 years, male 172.4
404_1 82 years, female 172.1
353_1 82 years, female 171.2
506_1 65 years, male 168.9
237_1 82 years, male 168.7
172_1 72 years, female 167.9
314_1 67 years, male 167.4
503_1 68 years, male 166.8
355_1 70 years, female 165.3
41_1 94 years, female 164.6
379_1 60 years, male 162.5
173_1 67 years, male 162.2
350_1 84 years, female 161.8
347_1 72 years, male 160.8
452_1 88 years, female 160.8
354_1 81 years, female 159.9
389_1 86 years, female 158.5
480_1 63 years, male 158.4
351_1 91 years, male 153.1
99_1 64 years, male 152.6
349_1 83 years, male 151.0
177_1 74 years, male 144.1
264_1 73 years, female 142.5
163_1 78 years, male 138.8
384_1 83 years, male 138.4
317_1 60 years, male 137.5
295_1 61 years, female 133.7
356_1 87 years, female 129.7
218_1 71 years, female 124.3
394_1 75 years, female 120.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 36.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 36.4
FF:10030-101E3 24-65 years, mixed 36.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 171.8
Pig sample Sample description nTPM
Retina
nTPM: 171.8
Samples: 4

Max nTPM: 201.6
Min nTPM: 160.3
Sample A Female 160.7
Sample B Female 201.6
Sample C Male 160.3
Sample D Male 164.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 582.1
Mouse sample Sample description nTPM
Retina
nTPM: 582.1
Samples: 4

Max nTPM: 616.3
Min nTPM: 525.6
Sample A Male 616.3
Sample B Male 585.5
Sample C Female 525.6
Sample D Female 601.1

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