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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:118.0 nTPM
HPA:118.0 nTPM
GTEx:120.8 nTPM
FANTOM5:55.5 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:68.6 nTPM
Allen mouse:0.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 118.0
Sample id Sample description nTPM
Amygdala
nTPM: 116.1
2695 Female, age 67, right hemisphere 146.1
2514 Male, age 75, right hemisphere 114.1
2517 Female, age 94, left hemisphere 111.1
1987 Female, age 91, left hemisphere 104.8
2814 Male, age 76, right hemisphere 104.6
Basal amygdala
nTPM: 112.7
2609 Male, age 75, right hemisphere 162.0
2243 Female, age 91, right hemisphere 112.1
2110 Male, age 80, left hemisphere 110.6
2685 Female, age 94, left hemisphere 100.8
1955 Male, age 76, both hemispheres 99.7
2827 Female, age 67, right hemisphere 90.8
Central amygdala
nTPM: 118.0
2515 Male, age 75, right hemisphere 140.1
1905 Male, age 76, both hemispheres 126.9
2239 Male, age 80, left hemisphere 118.1
2701 Female, age 91, right hemisphere 108.8
2826 Female, age 94, left hemisphere 96.2
Corticomedial amygdala
nTPM: 110.7
2428 Male, age 75, right hemisphere 142.7
2829 Male, age 80, left hemisphere 120.7
2242 Female, age 91, right hemisphere 107.2
2429 Female, age 94, left hemisphere 101.5
2535 Female, age 67, right hemisphere 98.2
2240 Male, age 76, both hemispheres 94.2
Lateral amygdala
nTPM: 116.5
2516 Male, age 75, right hemisphere 156.5
2256 Male, age 80, left hemisphere 122.6
2255 Female, age 91, right hemisphere 116.6
1883 Male, age 76, both hemispheres 116.0
2830 Female, age 67, right hemisphere 97.0
2534 Female, age 94, left hemisphere 90.4
Stria terminalis, bed nucleus
nTPM: 86.9
2201 Male, age 74, unknown 116.8
2486 Female, age 94, both hemispheres 75.9
1974 Female, age 91, both hemispheres 68.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 120.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 120.8
Samples: 152

Max nTPM: 349.6
Min nTPM: 7.3
Std nTPM: 62.8
Median nTPM: 115.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 349.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 333.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 273.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 272.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 268.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 266.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 235.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 230.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 228.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 224.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 223.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 213.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 200.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 199.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 196.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 195.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 193.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 193.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 192.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 191.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 190.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 186.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 185.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 185.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 184.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 182.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 180.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 180.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 174.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 173.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 169.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 168.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 162.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 159.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 158.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 157.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 157.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 156.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 154.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 150.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 148.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 148.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 147.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 147.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 146.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 145.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 143.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 142.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 142.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 141.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 141.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 141.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 141.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 140.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 139.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 139.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 139.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 139.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 134.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 133.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 130.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 126.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 126.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 124.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 123.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 123.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 123.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 120.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 120.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 119.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 118.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 116.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 116.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 115.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 115.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 115.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 113.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 110.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 110.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 110.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 108.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 107.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 106.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 105.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 104.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 102.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 100.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 100.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 99.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 98.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 98.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 98.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 96.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 95.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 95.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 94.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 92.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 91.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 91.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 90.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 90.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 89.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 87.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 85.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 84.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 83.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 82.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 80.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 79.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 78.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 77.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 76.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 76.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 74.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 74.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 72.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 72.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 72.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 71.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 68.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 65.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 62.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 62.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 61.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 61.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 57.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 56.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 55.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 55.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 55.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 53.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 52.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 52.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 51.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 50.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 46.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 46.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 42.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 40.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 38.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 38.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 37.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 36.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 28.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 28.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 22.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 21.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 20.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 13.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 7.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 55.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 55.5
FF:10151-102I7 76 years, female 55.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.1
Pig sample Sample description nTPM
Amygdala
nTPM: 26.1
Samples: 4

Max nTPM: 31.3
Min nTPM: 20.6
Sample A Female 29.0
Sample B Female 20.6
Sample C Male 31.3
Sample D Male 23.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 68.6
Samples: 4

Max nTPM: 78.8
Min nTPM: 57.3
Sample A Male 57.3
Sample B Male 62.6
Sample C Female 78.8
Sample D Female 75.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.7
100146154 Antisense, RP_110421_02_D11, Mouse strain C57BL/6J (56 days, male) 1.4
448 Antisense, RP_Baylor_102781, Mouse strain C57BL/6J (56 days, male) 0.1

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