MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:129.6 nTPM
HPA:129.6 nTPM
GTEx:236.7 nTPM
FANTOM5:487.8 Scaled Tags Per Million
Pig:218.8 nTPM
Mouse:191.8 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.9
1830 Male, age 51, unknown 126.5
2411 Female, age 72, unknown 125.9
2019 Male, age 18, unknown 123.9
1870 Female, age 42, unknown 121.6
1833 Male, age 53, unknown 120.1
2828 Female, age 72, unknown 114.2
2666 Male, age 74, left hemisphere 109.4
1827 Male, age 72, unknown 103.7
2586 Male, age 75, left hemisphere 103.4
2219 Male, age 76, both hemispheres 99.9
Dorsal raphe nucleus
nTPM: 103.8
2750 Male, age 76, both hemispheres 126.9
1828 Male, age 53, unknown 104.0
2016 Female, age 72, unknown 102.3
2047 Male, age 72, unknown 94.6
2298 Female, age 72, unknown 90.9
Inferior colliculus
nTPM: 99.6
1890 Male, age 53, unknown 100.9
1848 Female, age 42, unknown 100.8
2849 Male, age 72, unknown 100.7
2097 Female, age 72, unknown 95.9
Median raphe nucleus
nTPM: 102.6
2220 Male, age 76, midline 102.6
Pedunculopontine tegmental nucleus
nTPM: 109.1
2334 Male, age 80, both hemispheres 112.8
2338 Male, age 61, both hemispheres 112.4
1921 Female, age 85, both hemispheres 102.2
Periaquaductal grey, anterior
nTPM: 94.5
2502 Female, age 75, unknown 98.0
1947 Male, age 18, unknown 95.6
1795 Male, age 51, unknown 89.9
Periaquaductal grey, dorsal
nTPM: 93.0
2464 Female, age 72, unknown 102.9
1831 Male, age 72, unknown 94.9
2850 Male, age 76, both hemispheres 88.1
1840 Male, age 53, unknown 85.9
Periaquaductal grey, lateral
nTPM: 95.3
2272 Male, age 74, both hemispheres 102.0
2053 Male, age 18, unknown 98.4
2140 Male, age 76, both hemispheres 85.6
Pretectal area
nTPM: 100.1
1815 Male, age 53, unknown 109.6
2407 Male, age 75, both hemispheres 106.6
1817 Female, age 42, unknown 105.9
2007 Male, age 72, unknown 103.8
2316 Male, age 76, right hemisphere 101.2
2825 Male, age 18, unknown 99.6
2273 Male, age 74, both hemispheres 99.2
2667 Female, age 75, unknown 98.7
2224 Female, age 72, unknown 93.2
1944 Female, age 72, unknown 92.7
1816 Male, age 51, unknown 91.0
Red nucleus
nTPM: 129.6
1865 Male, age 51, unknown 141.9
2823 Male, age 76, right hemisphere 140.9
1821 Female, age 72, unknown 138.7
1904 Male, age 53, unknown 138.4
2769 Male, age 72, unknown 135.1
2227 Male, age 72, unknown 134.1
1954 Female, age 42, unknown 127.0
2503 Female, age 72, unknown 126.8
2785 Male, age 18, unknown 126.6
2588 Male, age 74, left hemisphere 121.8
2584 Male, age 75, left hemisphere 113.7
2725 Female, age 75, unknown 110.6
Substantia nigra
nTPM: 105.8
2583 Male, age 75, right hemisphere 117.4
2590 Female, age 75, unknown 111.3
1851 Male, age 51, unknown 110.6
1941 Male, age 53, unknown 109.3
1889 Female, age 72, unknown 108.5
2699 Male, age 18, unknown 106.6
1916 Female, age 42, unknown 102.3
2409 Female, age 72, unknown 99.3
2665 Male, age 74, both hemispheres 98.9
2241 Male, age 72, unknown 94.5
Superior colliculus
nTPM: 108.0
1995 Male, age 72, unknown 124.3
1913 Female, age 42, unknown 124.1
2587 Male, age 74, left hemisphere 115.1
1895 Male, age 76, right hemisphere 111.8
2668 Female, age 75, unknown 111.4
1839 Male, age 51, unknown 109.3
1796 Male, age 53, unknown 99.3
2664 Male, age 75, both hemispheres 96.3
2087 Female, age 72, unknown 94.3
2261 Male, age 18, unknown 94.3
Ventral tegmental area
nTPM: 110.9
2223 Female, age 72, unknown 135.1
2410 Female, age 72, unknown 119.4
2218 Male, age 76, both hemispheres 104.9
1915 Female, age 42, unknown 103.1
1942 Male, age 51, unknown 103.1
2021 Male, age 53, unknown 99.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 236.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 236.7
Samples: 139

Max nTPM: 601.7
Min nTPM: 106.4
Std nTPM: 88.2
Median nTPM: 218.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 601.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 542.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 509.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 497.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 425.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 413.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 402.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 394.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 392.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 383.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 368.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 487.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 487.8
FF:10158-103A5 76 years, female 487.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 218.8
Pig sample Sample description nTPM
Midbrain
nTPM: 218.8
Samples: 4

Max nTPM: 434.1
Min nTPM: 126.2
Sample A Female 434.1
Sample B Female 172.3
Sample C Male 142.7
Sample D Male 126.2
Periaqueductal gray
nTPM: 134.3
Samples: 3

Max nTPM: 147.2
Min nTPM: 126.1
Sample B Female 147.2
Sample C Male 129.5
Sample D Male 126.1
Substantia nigra
nTPM: 192.7
Samples: 4

Max nTPM: 244.2
Min nTPM: 124.8
Sample A Female 225.7
Sample B Female 124.8
Sample C Male 176.0
Sample D Male 244.2
Superior colliculi
nTPM: 176.8
Samples: 4

Max nTPM: 227.4
Min nTPM: 96.9
Sample A Female 227.4
Sample B Female 96.9
Sample C Male 199.4
Sample D Male 183.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 191.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 191.8
Samples: 4

Max nTPM: 204.6
Min nTPM: 168.3
Sample A Male 192.3
Sample B Male 168.3
Sample C Female 201.8
Sample D Female 204.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
75651224 Antisense, RP_060518_01_D02, Mouse strain C57BL/6J (56 days, male) 9.2
74990520 Antisense, RP_060410_01_C02, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.