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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:101.6 nTPM
HPA:101.6 nTPM
GTEx:156.1 nTPM
FANTOM5:197.0 Scaled Tags Per Million
Pig:92.6 nTPM
Mouse:137.9 nTPM
Allen mouse:9.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 101.6
Sample id Sample description nTPM
Amygdala
nTPM: 101.6
2814 Male, age 76, right hemisphere 111.7
2695 Female, age 67, right hemisphere 104.7
2514 Male, age 75, right hemisphere 103.6
2517 Female, age 94, left hemisphere 95.1
1987 Female, age 91, left hemisphere 92.6
Basal amygdala
nTPM: 94.4
2827 Female, age 67, right hemisphere 97.8
2609 Male, age 75, right hemisphere 97.5
2685 Female, age 94, left hemisphere 95.0
1955 Male, age 76, both hemispheres 94.7
2110 Male, age 80, left hemisphere 93.9
2243 Female, age 91, right hemisphere 87.9
Central amygdala
nTPM: 97.2
2826 Female, age 94, left hemisphere 104.4
1905 Male, age 76, both hemispheres 100.4
2515 Male, age 75, right hemisphere 95.1
2701 Female, age 91, right hemisphere 93.4
2239 Male, age 80, left hemisphere 93.0
Corticomedial amygdala
nTPM: 90.1
2428 Male, age 75, right hemisphere 96.9
2829 Male, age 80, left hemisphere 90.1
2535 Female, age 67, right hemisphere 89.5
2429 Female, age 94, left hemisphere 89.4
2240 Male, age 76, both hemispheres 87.4
2242 Female, age 91, right hemisphere 87.2
Lateral amygdala
nTPM: 100.9
1883 Male, age 76, both hemispheres 107.2
2830 Female, age 67, right hemisphere 106.7
2516 Male, age 75, right hemisphere 103.4
2534 Female, age 94, left hemisphere 98.2
2256 Male, age 80, left hemisphere 98.0
2255 Female, age 91, right hemisphere 91.7
Stria terminalis, bed nucleus
nTPM: 87.5
1974 Female, age 91, both hemispheres 89.3
2201 Male, age 74, unknown 88.2
2486 Female, age 94, both hemispheres 84.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 156.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 156.1
Samples: 152

Max nTPM: 366.3
Min nTPM: 26.8
Std nTPM: 52.6
Median nTPM: 142.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 366.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 342.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 303.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 283.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 282.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 270.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 262.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 251.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 245.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 242.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 240.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 236.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 231.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 225.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 223.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 223.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 221.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 219.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 218.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 217.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 215.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 214.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 212.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 211.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 208.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 206.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 203.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 201.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 197.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 193.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 193.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 193.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 192.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 188.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 187.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 186.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 184.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 182.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 182.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 182.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 180.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 179.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 179.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 178.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 175.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 174.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 174.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 174.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 173.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 172.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 170.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 169.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 169.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 169.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 168.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 167.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 166.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 162.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 162.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 160.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 159.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 158.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 157.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 157.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 155.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 153.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 152.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 148.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 148.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 147.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 147.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 146.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 145.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 145.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 143.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 143.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 141.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 141.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 140.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 139.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 139.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 139.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 139.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 138.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 138.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 138.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 137.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 137.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 137.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 135.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 135.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 135.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 133.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 132.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 131.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 130.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 130.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 129.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 129.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 128.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 128.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 126.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 125.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 124.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 124.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 124.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 122.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 121.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 121.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 121.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 120.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 120.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 118.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 117.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 116.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 116.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 115.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 115.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 115.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 114.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 114.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 113.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 113.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 112.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 112.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 110.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 109.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 109.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 109.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 108.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 108.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 108.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 107.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 105.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 102.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 102.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 101.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 101.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 100.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 96.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 96.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 95.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 95.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 93.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 90.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 90.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 89.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 88.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 87.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 85.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 77.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 197.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 197.0
FF:10151-102I7 76 years, female 197.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 92.6
Pig sample Sample description nTPM
Amygdala
nTPM: 92.6
Samples: 4

Max nTPM: 112.2
Min nTPM: 73.2
Sample A Female 112.2
Sample B Female 92.2
Sample C Male 92.6
Sample D Male 73.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 137.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 137.9
Samples: 4

Max nTPM: 173.8
Min nTPM: 123.0
Sample A Male 125.1
Sample B Male 123.0
Sample C Female 173.8
Sample D Female 129.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.8
75651224 Antisense, RP_060518_01_D02, Mouse strain C57BL/6J (56 days, male) 10.6
74990520 Antisense, RP_060410_01_C02, Mouse strain C57BL/6J (56 days, male) 9.0

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