MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.3 nTPM
HPA:43.3 nTPM
GTEx:36.6 nTPM
FANTOM5:74.5 Scaled Tags Per Million
Pig:39.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.3
2586 Male, age 75, left hemisphere 61.7
2666 Male, age 74, left hemisphere 47.7
2828 Female, age 72, unknown 44.6
1827 Male, age 72, unknown 42.5
2411 Female, age 72, unknown 41.5
2019 Male, age 18, unknown 40.1
1833 Male, age 53, unknown 40.0
1870 Female, age 42, unknown 40.0
1830 Male, age 51, unknown 38.4
2219 Male, age 76, both hemispheres 36.2
Dorsal raphe nucleus
nTPM: 38.1
2047 Male, age 72, unknown 40.3
1828 Male, age 53, unknown 39.0
2298 Female, age 72, unknown 38.8
2016 Female, age 72, unknown 36.4
2750 Male, age 76, both hemispheres 36.0
Inferior colliculus
nTPM: 39.7
1848 Female, age 42, unknown 42.6
2849 Male, age 72, unknown 42.6
1890 Male, age 53, unknown 37.1
2097 Female, age 72, unknown 36.6
Median raphe nucleus
nTPM: 37.0
2220 Male, age 76, midline 37.0
Pedunculopontine tegmental nucleus
nTPM: 35.9
1921 Female, age 85, both hemispheres 38.9
2334 Male, age 80, both hemispheres 38.0
2338 Male, age 61, both hemispheres 30.8
Periaquaductal grey, anterior
nTPM: 43.2
1947 Male, age 18, unknown 43.6
2502 Female, age 75, unknown 43.5
1795 Male, age 51, unknown 42.5
Periaquaductal grey, dorsal
nTPM: 38.8
1840 Male, age 53, unknown 46.7
2464 Female, age 72, unknown 40.3
1831 Male, age 72, unknown 35.6
2850 Male, age 76, both hemispheres 32.9
Periaquaductal grey, lateral
nTPM: 33.9
2053 Male, age 18, unknown 37.4
2140 Male, age 76, both hemispheres 35.4
2272 Male, age 74, both hemispheres 29.1
Pretectal area
nTPM: 40.0
2007 Male, age 72, unknown 47.5
1816 Male, age 51, unknown 44.8
1817 Female, age 42, unknown 44.6
1944 Female, age 72, unknown 42.4
2825 Male, age 18, unknown 41.7
2407 Male, age 75, both hemispheres 41.2
1815 Male, age 53, unknown 40.3
2224 Female, age 72, unknown 37.3
2667 Female, age 75, unknown 35.9
2316 Male, age 76, right hemisphere 34.9
2273 Male, age 74, both hemispheres 29.4
Red nucleus
nTPM: 38.6
2584 Male, age 75, left hemisphere 46.9
2588 Male, age 74, left hemisphere 44.8
2725 Female, age 75, unknown 41.2
2785 Male, age 18, unknown 40.3
2769 Male, age 72, unknown 39.6
2227 Male, age 72, unknown 38.4
1821 Female, age 72, unknown 37.7
1954 Female, age 42, unknown 36.8
2503 Female, age 72, unknown 36.7
1904 Male, age 53, unknown 34.7
2823 Male, age 76, right hemisphere 33.3
1865 Male, age 51, unknown 33.1
Substantia nigra
nTPM: 39.0
2583 Male, age 75, right hemisphere 44.5
2665 Male, age 74, both hemispheres 43.3
1889 Female, age 72, unknown 41.3
1851 Male, age 51, unknown 41.1
1916 Female, age 42, unknown 40.7
1941 Male, age 53, unknown 39.0
2590 Female, age 75, unknown 38.3
2409 Female, age 72, unknown 34.2
2699 Male, age 18, unknown 33.8
2241 Male, age 72, unknown 33.7
Superior colliculus
nTPM: 41.2
2664 Male, age 75, both hemispheres 56.9
1839 Male, age 51, unknown 43.1
2668 Female, age 75, unknown 42.1
1796 Male, age 53, unknown 41.3
2087 Female, age 72, unknown 40.5
2261 Male, age 18, unknown 40.2
1895 Male, age 76, right hemisphere 39.8
2587 Male, age 74, left hemisphere 37.5
1995 Male, age 72, unknown 36.5
1913 Female, age 42, unknown 34.2
Ventral tegmental area
nTPM: 38.1
2410 Female, age 72, unknown 41.5
1915 Female, age 42, unknown 39.6
1942 Male, age 51, unknown 39.5
2021 Male, age 53, unknown 37.2
2218 Male, age 76, both hemispheres 36.3
2223 Female, age 72, unknown 34.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.6
Samples: 139

Max nTPM: 65.5
Min nTPM: 17.7
Std nTPM: 8.2
Median nTPM: 36.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 65.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 60.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 53.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 52.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 49.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 49.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 49.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 49.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 49.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 49.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.5
FF:10158-103A5 76 years, female 74.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.8
Pig sample Sample description nTPM
Midbrain
nTPM: 39.8
Samples: 4

Max nTPM: 47.2
Min nTPM: 31.3
Sample A Female 47.2
Sample B Female 31.3
Sample C Male 42.4
Sample D Male 38.4
Periaqueductal gray
nTPM: 29.8
Samples: 3

Max nTPM: 32.7
Min nTPM: 27.8
Sample B Female 29.0
Sample C Male 32.7
Sample D Male 27.8
Substantia nigra
nTPM: 35.7
Samples: 4

Max nTPM: 41.9
Min nTPM: 29.5
Sample A Female 41.9
Sample B Female 29.5
Sample C Male 38.5
Sample D Male 32.7
Superior colliculi
nTPM: 37.1
Samples: 4

Max nTPM: 41.0
Min nTPM: 30.5
Sample A Female 41.0
Sample B Female 30.5
Sample C Male 38.9
Sample D Male 37.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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