MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.2 nTPM
HPA:56.2 nTPM
GTEx:52.8 nTPM
FANTOM5:43.8 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:36.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.0
2586 Male, age 75, left hemisphere 56.8
2019 Male, age 18, unknown 55.9
1827 Male, age 72, unknown 53.4
2219 Male, age 76, both hemispheres 53.3
2666 Male, age 74, left hemisphere 51.9
2828 Female, age 72, unknown 51.7
2411 Female, age 72, unknown 48.8
1833 Male, age 53, unknown 43.8
1830 Male, age 51, unknown 42.5
1870 Female, age 42, unknown 42.3
Dorsal raphe nucleus
nTPM: 46.0
1828 Male, age 53, unknown 49.5
2047 Male, age 72, unknown 46.6
2298 Female, age 72, unknown 46.4
2750 Male, age 76, both hemispheres 45.4
2016 Female, age 72, unknown 42.0
Inferior colliculus
nTPM: 46.6
1890 Male, age 53, unknown 49.8
2097 Female, age 72, unknown 49.8
1848 Female, age 42, unknown 45.0
2849 Male, age 72, unknown 41.7
Median raphe nucleus
nTPM: 47.0
2220 Male, age 76, midline 47.0
Pedunculopontine tegmental nucleus
nTPM: 46.1
1921 Female, age 85, both hemispheres 50.6
2334 Male, age 80, both hemispheres 46.9
2338 Male, age 61, both hemispheres 40.7
Periaquaductal grey, anterior
nTPM: 51.6
1795 Male, age 51, unknown 53.3
1947 Male, age 18, unknown 51.3
2502 Female, age 75, unknown 50.2
Periaquaductal grey, dorsal
nTPM: 43.6
1831 Male, age 72, unknown 45.3
2464 Female, age 72, unknown 43.4
2850 Male, age 76, both hemispheres 43.2
1840 Male, age 53, unknown 42.6
Periaquaductal grey, lateral
nTPM: 43.3
2053 Male, age 18, unknown 43.4
2272 Male, age 74, both hemispheres 43.4
2140 Male, age 76, both hemispheres 43.2
Pretectal area
nTPM: 53.1
1816 Male, age 51, unknown 67.0
2007 Male, age 72, unknown 64.0
1944 Female, age 72, unknown 62.4
1817 Female, age 42, unknown 62.1
1815 Male, age 53, unknown 55.3
2667 Female, age 75, unknown 51.6
2407 Male, age 75, both hemispheres 46.7
2316 Male, age 76, right hemisphere 44.9
2224 Female, age 72, unknown 44.0
2825 Male, age 18, unknown 43.4
2273 Male, age 74, both hemispheres 42.9
Red nucleus
nTPM: 49.6
2785 Male, age 18, unknown 55.5
2588 Male, age 74, left hemisphere 53.9
1821 Female, age 72, unknown 52.1
2725 Female, age 75, unknown 50.5
2503 Female, age 72, unknown 49.6
2584 Male, age 75, left hemisphere 48.7
1954 Female, age 42, unknown 48.5
2769 Male, age 72, unknown 48.4
1904 Male, age 53, unknown 47.7
1865 Male, age 51, unknown 47.1
2227 Male, age 72, unknown 46.6
2823 Male, age 76, right hemisphere 46.4
Substantia nigra
nTPM: 56.2
1916 Female, age 42, unknown 68.0
1851 Male, age 51, unknown 61.6
1941 Male, age 53, unknown 58.9
2665 Male, age 74, both hemispheres 58.5
1889 Female, age 72, unknown 58.4
2241 Male, age 72, unknown 55.2
2583 Male, age 75, right hemisphere 52.0
2409 Female, age 72, unknown 51.9
2699 Male, age 18, unknown 49.7
2590 Female, age 75, unknown 47.4
Superior colliculus
nTPM: 49.2
2668 Female, age 75, unknown 58.0
2087 Female, age 72, unknown 57.2
1796 Male, age 53, unknown 52.8
2261 Male, age 18, unknown 52.3
2664 Male, age 75, both hemispheres 49.1
1895 Male, age 76, right hemisphere 46.3
2587 Male, age 74, left hemisphere 44.7
1913 Female, age 42, unknown 44.5
1995 Male, age 72, unknown 43.7
1839 Male, age 51, unknown 43.1
Ventral tegmental area
nTPM: 51.5
2410 Female, age 72, unknown 60.5
1915 Female, age 42, unknown 56.0
2218 Male, age 76, both hemispheres 55.8
1942 Male, age 51, unknown 50.3
2021 Male, age 53, unknown 44.0
2223 Female, age 72, unknown 42.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.8
Samples: 139

Max nTPM: 102.2
Min nTPM: 25.6
Std nTPM: 16.3
Median nTPM: 49.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 102.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 98.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 92.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 92.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 91.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 88.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 85.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 82.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 81.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 77.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.8
FF:10158-103A5 76 years, female 43.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 28.9
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 12.0
Sample C Male 28.9
Sample D Male 21.5
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 15.1
Min nTPM: 11.6
Sample B Female 11.6
Sample C Male 15.1
Sample D Male 11.6
Substantia nigra
nTPM: 15.4
Samples: 4

Max nTPM: 18.9
Min nTPM: 13.1
Sample A Female 15.7
Sample B Female 13.1
Sample C Male 18.9
Sample D Male 13.9
Superior colliculi
nTPM: 22.4
Samples: 4

Max nTPM: 27.5
Min nTPM: 19.2
Sample A Female 19.2
Sample B Female 20.0
Sample C Male 27.5
Sample D Male 22.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 38.2
Min nTPM: 34.3
Sample A Male 34.7
Sample B Male 34.3
Sample C Female 37.6
Sample D Female 38.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70795835 Antisense, RP_050712_02_A11, Mouse strain C57BL/6J (56 days, male) 1.1
68844337 Antisense, RP_050222_01_D09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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