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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:64.1 nTPM
HPA:64.1 nTPM
GTEx:251.0 nTPM
FANTOM5:876.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 64.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 46.4
2565 Male, age 75, midline 73.3
2194 Female, age 79, both hemispheres 62.9
2816 Male, age 47, midline 39.9
2048 Male, age 55, midline 31.6
1981 Female, age 72, midline 24.2
Cervical spinal cord, dorsal horn
nTPM: 28.7
2721 Male, age 90, both hemispheres 39.7
1877 Male, age 55, unknown 38.8
2173 Female, age 72, unknown 38.2
2069 Male, age 47, both hemispheres 23.8
2296 Male, age 66, both hemispheres 23.7
2297 Male, age 75, both hemispheres 8.2
Cervical spinal cord, ventral horn
nTPM: 64.1
2809 Male, age 90, both hemispheres 95.8
2295 Male, age 66, both hemispheres 71.5
2480 Male, age 75, both hemispheres 62.7
2820 Female, age 79, both hemispheres 55.4
2098 Female, age 72, unknown 52.8
2068 Male, age 55, unknown 46.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 251.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 251.0
Samples: 159

Max nTPM: 705.9
Min nTPM: 114.4
Std nTPM: 81.3
Median nTPM: 230.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 705.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 526.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 427.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 420.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 412.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 403.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 403.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 393.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 385.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 380.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 372.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 366.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 359.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 356.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 352.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 351.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 347.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 347.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 343.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 341.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 341.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 340.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 339.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 339.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 336.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 335.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 332.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 330.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 324.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 324.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 323.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 314.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 314.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 311.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 311.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 310.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 307.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 306.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 306.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 303.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 303.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 301.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 292.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 290.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 284.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 279.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 277.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 274.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 273.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 272.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 271.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 270.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 270.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 269.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 268.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 267.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 266.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 265.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 265.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 263.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 261.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 261.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 258.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 252.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 250.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 248.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 245.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 244.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 244.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 241.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 240.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 239.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 237.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 236.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 233.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 232.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 232.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 232.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 231.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 230.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 229.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 229.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 229.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 228.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 228.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 228.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 227.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 227.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 225.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 222.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 222.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 222.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 222.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 221.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 219.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 218.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 216.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 215.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 215.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 214.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 214.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 213.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 212.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 211.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 211.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 209.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 208.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 206.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 205.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 205.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 205.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 204.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 202.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 200.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 199.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 198.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 198.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 197.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 197.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 197.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 193.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 192.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 191.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 191.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 188.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 188.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 187.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 186.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 186.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 186.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 181.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 179.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 179.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 179.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 176.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 176.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 174.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 173.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 171.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 171.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 168.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 167.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 167.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 167.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 165.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 163.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 163.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 161.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 154.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 147.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 145.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 145.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 144.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 141.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 140.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 140.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 133.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 119.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 114.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 876.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 876.5
FF:10159-103A6 76 years, female 956.5
FF:10181-103D1 60 years, female 796.5

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