BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA:20.2 nTPM
GTEx:13.9 nTPM
FANTOM5:60.2 Scaled Tags Per Million
Pig:14.7 nTPM
Mouse:37.3 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 20.1
2846 Female, age 79, unknown 21.0
2290 Female, age 72, unknown 20.9
1854 Male, age 80, left hemisphere 20.5
1857 Female, age 85, left hemisphere 20.1
2288 Male, age 75, left hemisphere 19.9
2481 Female, age 94, left hemisphere 19.8
2289 Male, age 61, right hemisphere 19.7
1781 Male, age 74, unknown 19.4
Claustrum
nTPM: 19.2
2198 Male, age 80, both hemispheres 20.2
1956 Male, age 74, unknown 19.9
2568 Male, age 61, both hemispheres 19.7
2196 Female, age 79, unknown 19.6
2284 Female, age 91, both hemispheres 19.2
2645 Female, age 72, unknown 18.9
2491 Male, age 75, both hemispheres 18.6
2392 Female, age 94, both hemispheres 18.3
2292 Female, age 85, both hemispheres 18.1
Globus pallidus, externus
nTPM: 19.4
2772 Female, age 79, unknown 20.5
2395 Male, age 75, both hemispheres 19.7
1996 Male, age 80, right hemisphere 19.4
2646 Male, age 61, right hemisphere 18.9
2567 Female, age 72, unknown 18.4
Globus pallidus, internus
nTPM: 19.2
2287 Male, age 75, right hemisphere 20.5
2483 Female, age 94, right hemisphere 20.3
2778 Female, age 91, both hemispheres 19.5
2037 Male, age 80, right hemisphere 18.8
1818 Male, age 74, unknown 18.7
2566 Female, age 72, unknown 18.7
2111 Female, age 85, right hemisphere 18.0
Nucleus accumbens
nTPM: 19.1
1856 Female, age 91, right hemisphere 20.4
2286 Male, age 75, left hemisphere 19.5
2698 Female, age 72, unknown 19.3
1783 Male, age 74, unknown 19.0
2391 Female, age 94, left hemisphere 18.8
1806 Female, age 85, left hemisphere 18.7
2824 Male, age 61, right hemisphere 18.5
2732 Male, age 80, right hemisphere 18.3
Nucleus basalis of Meynert
nTPM: 19.5
2569 Male, age 61, both hemispheres 20.5
2393 Male, age 80, right hemisphere 19.4
2821 Male, age 75, both hemispheres 19.3
2484 Female, age 94, left hemisphere 18.9
Nucleus of the diagonal band
nTPM: 19.6
1812 Female, age 91, both hemispheres 20.3
2775 Male, age 80, right hemisphere 20.2
2029 Male, age 61, right hemisphere 19.8
2195 Female, age 85, both hemispheres 19.2
1979 Male, age 74, unknown 18.7
Olfactory tubercle
nTPM: 19.5
1846 Male, age 80, right hemisphere 20.9
1998 Female, age 91, both hemispheres 19.8
2487 Female, age 94, left hemisphere 18.9
2856 Male, age 75, right hemisphere 18.3
Putamen
nTPM: 20.2
1838 Male, age 80, right hemisphere 21.5
1829 Male, age 74, unknown 20.5
2466 Female, age 79, unknown 20.5
2647 Male, age 75, left hemisphere 20.3
2482 Female, age 94, left hemisphere 19.7
1937 Female, age 91, right hemisphere 19.6
2489 Female, age 72, unknown 19.6
Septal nuclei
nTPM: 19.6
2031 Female, age 72, unknown 21.9
1960 Male, age 74, unknown 20.9
2059 Female, age 85, both hemispheres 20.5
2629 Female, age 94, right hemisphere 19.8
2009 Female, age 91, both hemispheres 19.1
2199 Male, age 80, right hemisphere 17.6
2394 Male, age 61, left hemisphere 17.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.9
Samples: 246

Max nTPM: 25.7
Min nTPM: 4.7
Std nTPM: 3.5
Median nTPM: 13.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 25.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 22.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 21.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 21.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 21.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 21.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 21.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 20.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 20.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 20.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 19.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 25.3
Min nTPM: 3.0
Std nTPM: 3.3
Median nTPM: 13.9
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 25.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 25.1
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 24.6
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 22.9
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 22.8
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 21.7
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 21.6
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 19.5
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 19.4
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 19.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 19.1
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Brain - Putamen (basal ganglia)
Average nTPM: 12.9
Samples: 205

Max nTPM: 21.3
Min nTPM: 4.2
Std nTPM: 3.6
Median nTPM: 12.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 21.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 20.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 20.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 20.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 20.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 19.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 19.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 19.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 19.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 19.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 19.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 60.2
FF:10164-103B2 76 years, female 60.2
Globus pallidus
Scaled Tags Per Million: 46.7
FF:10175-103C4 60 years, female 47.3
FF:10161-103A8 76 years, female 46.0
Nucleus accumbens
Scaled Tags Per Million: 56.6
FF:10037-101F1 23-56 years, mixed 56.6
Putamen
Scaled Tags Per Million: 53.7
FF:10176-103C5 60 years, female 53.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.7
Pig sample Sample description nTPM
Caudate
nTPM: 13.4
Samples: 4

Max nTPM: 14.0
Min nTPM: 12.7
Sample A Female 12.7
Sample B Female 13.5
Sample C Male 14.0
Sample D Male 13.4
Putamen
nTPM: 14.3
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.5
Sample A Female 14.5
Sample B Female 12.5
Sample C Male 15.7
Sample D Male 14.4
Septum
nTPM: 14.1
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.5
Sample A Female 14.5
Sample B Female 13.8
Sample C Male 15.6
Sample D Male 12.5
Ventral pallidum
nTPM: 14.7
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 14.4
Sample C Male 16.4
Sample D Male 14.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.1
Samples: 4

Max nTPM: 38.8
Min nTPM: 32.1
Sample A Male 34.5
Sample B Male 32.1
Sample C Female 38.8
Sample D Female 35.0
Septum
nTPM: 36.8
Samples: 4

Max nTPM: 41.0
Min nTPM: 30.3
Sample A Male 41.0
Sample B Male 37.0
Sample C Female 30.3
Sample D Female 38.7
Ventral forebrain
nTPM: 37.3
Samples: 4

Max nTPM: 43.3
Min nTPM: 33.7
Sample A Male 34.3
Sample B Male 37.9
Sample C Female 33.7
Sample D Female 43.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
70524283 Antisense, RP_050316_01_B06, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.1
70524283 Antisense, RP_050316_01_B06, Mouse strain C57BL/6J (56 days, male) 0.1

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