MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.7 nTPM
HPA:61.7 nTPM
GTEx:64.7 nTPM
FANTOM5:112.1 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:23.3 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.1
2666 Male, age 74, left hemisphere 62.7
2586 Male, age 75, left hemisphere 61.9
2019 Male, age 18, unknown 61.1
2219 Male, age 76, both hemispheres 61.0
2411 Female, age 72, unknown 59.9
2828 Female, age 72, unknown 59.5
1827 Male, age 72, unknown 59.4
1870 Female, age 42, unknown 59.1
1833 Male, age 53, unknown 58.2
1830 Male, age 51, unknown 58.1
Dorsal raphe nucleus
nTPM: 58.3
2750 Male, age 76, both hemispheres 61.6
2047 Male, age 72, unknown 59.2
1828 Male, age 53, unknown 58.2
2298 Female, age 72, unknown 56.9
2016 Female, age 72, unknown 55.5
Inferior colliculus
nTPM: 55.5
1890 Male, age 53, unknown 57.1
1848 Female, age 42, unknown 55.5
2849 Male, age 72, unknown 55.2
2097 Female, age 72, unknown 54.3
Median raphe nucleus
nTPM: 61.7
2220 Male, age 76, midline 61.7
Pedunculopontine tegmental nucleus
nTPM: 60.6
2338 Male, age 61, both hemispheres 62.4
2334 Male, age 80, both hemispheres 62.3
1921 Female, age 85, both hemispheres 57.2
Periaquaductal grey, anterior
nTPM: 58.9
1795 Male, age 51, unknown 59.3
2502 Female, age 75, unknown 59.0
1947 Male, age 18, unknown 58.3
Periaquaductal grey, dorsal
nTPM: 54.9
2464 Female, age 72, unknown 56.6
1831 Male, age 72, unknown 56.1
2850 Male, age 76, both hemispheres 54.2
1840 Male, age 53, unknown 52.8
Periaquaductal grey, lateral
nTPM: 56.3
2272 Male, age 74, both hemispheres 57.9
2053 Male, age 18, unknown 56.1
2140 Male, age 76, both hemispheres 55.0
Pretectal area
nTPM: 59.4
2007 Male, age 72, unknown 62.7
1816 Male, age 51, unknown 62.6
1817 Female, age 42, unknown 62.3
1815 Male, age 53, unknown 62.0
1944 Female, age 72, unknown 60.8
2407 Male, age 75, both hemispheres 59.8
2667 Female, age 75, unknown 59.7
2273 Male, age 74, both hemispheres 56.5
2316 Male, age 76, right hemisphere 56.4
2825 Male, age 18, unknown 55.6
2224 Female, age 72, unknown 55.1
Red nucleus
nTPM: 61.6
2503 Female, age 72, unknown 64.9
2584 Male, age 75, left hemisphere 63.3
2785 Male, age 18, unknown 63.1
2725 Female, age 75, unknown 62.8
1865 Male, age 51, unknown 61.5
2769 Male, age 72, unknown 61.3
1904 Male, age 53, unknown 61.2
2588 Male, age 74, left hemisphere 61.2
2227 Male, age 72, unknown 60.5
1954 Female, age 42, unknown 60.4
2823 Male, age 76, right hemisphere 60.1
1821 Female, age 72, unknown 59.0
Substantia nigra
nTPM: 60.6
1916 Female, age 42, unknown 65.4
1851 Male, age 51, unknown 62.6
2699 Male, age 18, unknown 62.3
1941 Male, age 53, unknown 61.8
1889 Female, age 72, unknown 61.2
2409 Female, age 72, unknown 60.3
2583 Male, age 75, right hemisphere 59.0
2590 Female, age 75, unknown 58.8
2665 Male, age 74, both hemispheres 57.9
2241 Male, age 72, unknown 56.5
Superior colliculus
nTPM: 59.1
2087 Female, age 72, unknown 61.1
1913 Female, age 42, unknown 60.6
1796 Male, age 53, unknown 60.2
2261 Male, age 18, unknown 59.9
1995 Male, age 72, unknown 59.3
2668 Female, age 75, unknown 59.0
2587 Male, age 74, left hemisphere 58.7
2664 Male, age 75, both hemispheres 57.9
1839 Male, age 51, unknown 57.8
1895 Male, age 76, right hemisphere 56.9
Ventral tegmental area
nTPM: 60.0
2410 Female, age 72, unknown 62.4
1915 Female, age 42, unknown 61.3
2218 Male, age 76, both hemispheres 60.3
2223 Female, age 72, unknown 60.0
2021 Male, age 53, unknown 58.2
1942 Male, age 51, unknown 57.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.7
Samples: 139

Max nTPM: 149.7
Min nTPM: 32.8
Std nTPM: 14.7
Median nTPM: 63.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 149.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 108.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 103.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 99.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 97.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 95.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 90.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 89.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 83.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 82.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.1
FF:10158-103A5 76 years, female 112.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.1
Pig sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 20.3
Min nTPM: 14.6
Sample A Female 20.3
Sample B Female 14.6
Sample C Male 19.3
Sample D Male 16.0
Periaqueductal gray
nTPM: 13.1
Samples: 3

Max nTPM: 13.8
Min nTPM: 12.0
Sample B Female 13.8
Sample C Male 13.4
Sample D Male 12.0
Substantia nigra
nTPM: 15.6
Samples: 4

Max nTPM: 16.3
Min nTPM: 14.9
Sample A Female 15.0
Sample B Female 14.9
Sample C Male 16.3
Sample D Male 16.0
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 20.1
Min nTPM: 16.6
Sample A Female 17.4
Sample B Female 16.6
Sample C Male 20.1
Sample D Male 18.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 25.4
Min nTPM: 21.8
Sample A Male 25.4
Sample B Male 21.8
Sample C Female 23.5
Sample D Female 22.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
74882206 Antisense, RP_060315_04_E05, Mouse strain C57BL/6J (56 days, male) 8.1
69608414 Antisense, RP_050426_04_A11, Mouse strain C57BL/6J (56 days, male) 6.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.